AutismKB 2.0

Annotation Detail for RAP1GAP2


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Basic Information Top
Gene Symbol:RAP1GAP2 ( DKFZp686O238,GARNL4,KIAA1039,RAP1GA3 )
Gene Full Name: RAP1 GTPase activating protein 2
Band: 17p13.3
Quick LinksEntrez ID:23108; OMIM: NA; Uniprot ID:RPGP2_HUMAN; ENSEMBL ID: ENSG00000132359; HGNC ID: 29176
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
7Phosphoserine; by PKG/PRKG1; in vitro.
45Phosphoserine.
49Phosphothreonine.
544Phosphoserine.
609Phosphoserine.
613Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015085
  • Location:chr17 2646481-2887780
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 2636318 2636645 327 10000
CTCF CD4SISSRdata 2636318 2636645 327 10000
CTCF HelaGSE12889 2636285 2636611 326 10034
CTCF G2GSE9613 2636369 2636621 252 9987
CTCF G2GSE9613 2642217 2642577 360 4085
Myc K562GSE19551 2636194 2636691 497 10039
hScc1 BcellGSE12603 2636369 2636621 252 9987
hScc1 CdLSGSE12603 2636369 2636621 252 9987
p130 SenescentGSE19898 2636211 2636536 325 10108
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 2898756 2899157 401 11176
CTCF CD4SISSRdata 2898756 2899157 401 11176
CTCF G2GSE9613 2898590 2899097 507 11063
Fos K562GSE19551 2898807 2899351 544 11299
PHF8 293TGSE20725 2898533 2899842 1309 11407
Rb QuiescentGSE19898 2899281 2899640 359 11680
TFAP2C MCF7GSE21234 2898717 2899646 929 11401
hScc1 BcellGSE12603 2898764 2899132 368 11168
hScc1 CdLSGSE12603 2898590 2899275 685 11152
hScc1 G2GSE9613 2898590 2899165 575 11097
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 2663803 2665938 2135 0
CBP T30-glioblastomaGSE21026 2804822 2805678 856 0
CTCF CD4GSE12889 2678421 2678845 424 0
CTCF CD4GSE12889 2687340 2687539 199 0
CTCF CD4GSE12889 2698904 2699141 237 0
CTCF CD4GSE12889 2780227 2780369 142 0
CTCF CD4GSE12889 2863081 2863317 236 0
CTCF CD4SISSRdata 2678421 2678845 424 0
CTCF CD4SISSRdata 2687340 2687539 199 0
CTCF CD4SISSRdata 2698904 2699141 237 0
CTCF CD4SISSRdata 2780227 2780369 142 0
CTCF CD4SISSRdata 2863081 2863317 236 0
CTCF HelaGSE12889 2698883 2699100 217 0
CTCF JurkatGSE12889 2698897 2699122 225 0
CTCF JurkatGSE12889 2862984 2863402 418 0
CTCF G2GSE9613 2671902 2672121 219 0
CTCF G2GSE9613 2676345 2676625 280 0
CTCF G2GSE9613 2678413 2678841 428 0
CTCF G2GSE9613 2691664 2691869 205 0
CTCF G2GSE9613 2698874 2699540 666 0
CTCF G2GSE9613 2756343 2756663 320 0
CTCF G2GSE9613 2780445 2780788 343 0
CTCF G2GSE9613 2810510 2810935 425 0
CTCF G2GSE9613 2854308 2854767 459 0
CTCF G2GSE9613 2863040 2863268 228 0
CTCF G2GSE9613 2876151 2876419 268 0
CTCF G2GSE9613 2881180 2881420 240 0
ER Breast-CancerGSE22609 2662023 2662658 635 0
Fos K562GSE19551 2661966 2662724 758 0
FoxA1 MCF7MACSdata 2810203 2810370 167 0
H3ac HepG2E 2825550 2826057 507 0
KLF4 hESGSE17917 2863062 2863318 256 0
P300 T30-glioblastomaGSE21026 2804928 2805697 769 0
PolII HeLaGSE12783 2825292 2826830 1538 0
RARA MCF7GSE15244 2810206 2810935 729 0
RARA MCF7GSE15244 2850478 2851974 1496 0
RARG MCF7GSE15244 2776228 2776591 363 0
RARG MCF7GSE15244 2810206 2810935 729 0
RARG MCF7GSE15244 2815146 2816455 1309 0
RARG MCF7GSE15244 2851020 2851562 542 0
RARG MCF7GSE15244 2854719 2855272 553 0
Rb GrowingGSE19898 2678511 2678759 248 0
Rb GrowingGSE19898 2733665 2733871 206 0
Rb SenescentGSE19898 2671928 2672199 271 0
Rb SenescentGSE19898 2678506 2678710 204 0
Rb SenescentGSE19898 2854280 2854597 317 0
Rb shRbSenescenceGSE19898 2805240 2805449 209 0
STAT1 HeLaGSE12782 2804407 2806940 2533 0
STAT1 HeLaGSE12783 2804537 2806844 2307 0
STAT1 IFNSISSRdata 2804835 2805726 891 0
TFAP2C MCF7GSE21234 2651557 2651945 388 0
TFAP2C MCF7GSE21234 2669739 2670050 311 0
TFAP2C MCF7GSE21234 2704785 2705052 267 0
TFAP2C MCF7GSE21234 2733605 2734204 599 0
TFAP2C MCF7GSE21234 2810018 2811005 987 0
TFAP2C MCF7GSE21234 2815316 2816441 1125 0
TFAP2C MCF7GSE21234 2850276 2851977 1701 0
TFAP2C MCF7GSE21234 2853839 2854701 862 0
USF1 HepG2E 2825550 2826057 507 0
VDR GM10861-stimGSE22484 2852248 2855241 2993 0
hScc1 BcellGSE12603 2678413 2679003 590 0
hScc1 BcellGSE12603 2694887 2695141 254 0
hScc1 BcellGSE12603 2698874 2699783 909 0
hScc1 BcellGSE12603 2725725 2725941 216 0
hScc1 BcellGSE12603 2761075 2761273 198 0
hScc1 BcellGSE12603 2862748 2863738 990 0
hScc1 BcellGSE12603 2883971 2884269 298 0
hScc1 CdLSGSE12603 2650700 2650837 137 0
hScc1 CdLSGSE12603 2678413 2679003 590 0
hScc1 CdLSGSE12603 2698874 2699333 459 0
hScc1 CdLSGSE12603 2862712 2863452 740 0
hScc1 G2GSE9613 2678413 2678906 493 0
hScc1 G2GSE9613 2698874 2699540 666 0
p130 QuiescentGSE19898 2854324 2854545 221 0
p130 SenescentGSE19898 2662161 2662640 479 0
p130 SenescentGSE19898 2833008 2833318 310 0
p130 SenescentGSE19898 2865898 2866191 293 0
p130 shRbSenescentGSE19898 2678532 2678768 236 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
10478 mRNA GARNL4 chr17 2646481 2887781 232 mRNA chr17 2812291 2815939Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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