AutismKB 2.0

Annotation Detail for SPG20


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Basic Information Top
Gene Symbol:SPG20 ( KIAA0610,SPARTIN,TAHCCP1 )
Gene Full Name: spastic paraplegia 20 (Troyer syndrome)
Band: 13q13.3
Quick LinksEntrez ID:23111; OMIM: 607111; Uniprot ID:SPG20_HUMAN; ENSEMBL ID: ENSG00000133104; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1N-acetylmethionine.
470Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
20Phosphotyrosine(Jak)HMM predict
45Phosphotyrosine(Syk)HMM predict
64Phosphoserine(CK1)HMM predict
131Phosphoserine(IKK)HMM predict
133O-linkedHMM predict
144N-linkedHMM predict
145O-linkedHMM predict
146O-linkedHMM predict
146O-linkedHMM predict
147O-linkedHMM predict
149O-linkedHMM predict
158O-linkedHMM predict
158Phosphoserine(IKK)HMM predict
158O-linkedHMM predict
160Phosphoserine(IKK)HMM predict
202Phosphotyrosine(EGFR)HMM predict
204N-linkedHMM predict
206Phosphoserine(ATM)HMM predict
293Phosphotyrosine(INSR)HMM predict
392Phosphothreonine(CK2)HMM predict
393Phosphoserine(CK1)HMM predict
394Phosphoserine(CK1)HMM predict
432Phosphoserine(PKA)HMM predict
574Phosphothreonine(PKC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015087
  • Location:chr13 35773776-35818452
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 35818794 35819161 367 525
CTCF CD4SISSRdata 35818794 35819161 367 525
CTCF JurkatGSE12889 35818749 35819131 382 488
CTCF G2GSE9613 35818388 35819202 814 343
Nanog ESGSE20650 35828125 35828592 467 9906
hScc1 BcellGSE12603 35818244 35819202 958 271
hScc1 CdLSGSE12603 35818630 35819238 608 482
hScc1 G2GSE9613 35818359 35819064 705 259
p130 QuiescentGSE19898 35818641 35819037 396 387
p130 shRbQuiescentGSE19898 35818487 35819185 698 384
p130 shRbSenescentGSE19898 35818531 35819081 550 354
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 35755090 35755272 182 18596
CTCF CD4SISSRdata 35755090 35755272 182 18596
CTCF G2GSE9613 35754750 35755429 679 18687
CTCF G2GSE9613 35769674 35769966 292 3957
Myc K562GSE19551 35769573 35770191 618 3895
Stat6 IL-4-hr1GSE17850 35769404 35770163 759 3993
TFAP2C MCF7GSE21234 35769652 35770320 668 3791
hScc1 BcellGSE12603 35755040 35755462 422 18526
hScc1 CdLSGSE12603 35755040 35755324 284 18595
hScc1 G2GSE9613 35754750 35755569 819 18617
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K27me3 colorectalcancer 35816828 35818244 1416 0
H3K4me3 colorectalcancer 35816860 35818323 1463 0
Nanog ESGSE20650 35788512 35788782 270 0
Rb QuiescentGSE19898 35817730 35818228 498 0
TAF HelaGSE8489 35816828 35818197 1369 0
TAF k562GSE8489 35816218 35818278 2060 0
TFAP2C MCF7GSE21234 35796202 35796654 452 0
p130 shRbQuiescentGSE19898 35817780 35818282 502 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
7068 EST chr13 35818567 35841738 63 HTC SPG20 chr13 35775741 35818630Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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