Annotation Detail for NCDN

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Basic Information Top

Gene Symbol:	NCDN ( KIAA0607 )
Gene Full Name:	neurochondrin
Band:	1p34.3
Quick Links	Entrez ID:23154; OMIM: 608458; Uniprot ID:NCDN_HUMAN; ENSEMBL ID: ENSG00000020129; HGNC ID: 17597
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:2 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
50	Phosphoserine.
60	Phosphothreonine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_001014839
Location:chr1 35795979-35804964
strand:+

Upstream the gene:1 results
Downstream the gene:5 results
Inside the gene:14 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
P300	T30-glioblastoma	GSE21026	35794970	35796913	1943	38

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	35807041	35807419	378	2266
CTCF	CD4	SISSRdata	35807041	35807419	378	2266
CTCF	G2	GSE9613	35806390	35807811	1421	2136
hScc1	Bcell	GSE12603	35807083	35807665	582	2410
hScc1	CdLS	GSE12603	35806969	35807775	806	2408

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	35802876	35803108	232	0
CTCF	CD4	SISSRdata	35802876	35803108	232	0
CTCF	G2	GSE9613	35798709	35799288	579	0
CTCF	G2	GSE9613	35802646	35803687	1041	0
Oct1	H2O2-Hela	GSE14283	35802664	35802694	30	0
Oct1	Hela	GSE14283	35802662	35802695	33	0
hScc1	Bcell	GSE12603	35798451	35799363	912	0
hScc1	Bcell	GSE12603	35802459	35803141	682	0
hScc1	Bcell	GSE12603	35804779	35805003	224	0
hScc1	CdLS	GSE12603	35802820	35803434	614	0
p130	Senescent	GSE19898	35795547	35796538	991	0
p130	shRbQuiescent	GSE19898	35795341	35796627	1286	0
p130	shRbQuiescent	GSE19898	35802955	35803272	317	0
p130	shRbSenescent	GSE19898	35795509	35796569	1060	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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