AutismKB 2.0

Annotation Detail for SNX13


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Basic Information Top
Gene Symbol:SNX13 ( KIAA0713,RGS-PX1 )
Gene Full Name: sorting nexin 13
Band: 7p21.1
Quick LinksEntrez ID:23161; OMIM: 606589; Uniprot ID:SNX13_HUMAN; ENSEMBL ID: ENSG00000071189; HGNC ID: 21335
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
359Phosphothreonine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
71Phosphoserine(MAPK)HMM predict
71Phosphoserine(CDC2)HMM predict
95Phosphothreonine(PKA)HMM predict
158Phosphothreonine(PKC)HMM predict
180Phosphothreonine(CK2)HMM predict
267Phosphoserine(CK2)HMM predict
271PhosphotyrosineHMM predict
271Phosphotyrosine(INSR)HMM predict
287Phosphotyrosine(Syk)HMM predict
432N-linkedHMM predict
455Phosphoserine(CDC2)HMM predict
459Phosphothreonine(PKC)HMM predict
500Phosphotyrosine(EGFR)HMM predict
527Phosphoserine(CK2)HMM predict
536N-linkedHMM predict
538Phosphoserine(CDC2)HMM predict
542Phosphoserine(PKA)HMM predict
552N-linkedHMM predict
555Phosphoserine(CK1)HMM predict
570Phosphotyrosine(Syk)HMM predict
576Phosphotyrosine(Syk)HMM predict
609Phosphothreonine(PKC)HMM predict
724Phosphoserine(IKK)HMM predict
771Phosphoserine(PKG)HMM predict
959Phosphothreonine(PKC)HMM predict
960O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015132
  • Location:chr7 17798181-17946655
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 17946506 17946936 430 66
CTCF CD4SISSRdata 17946506 17946936 430 66
H3K4me3 colorectalcancer 17947207 17947594 387 745
TAF HelaGSE8489 17947016 17948290 1274 998
TFAP2C MCF7GSE21234 17948388 17948758 370 1918
hScc1 BcellGSE12603 17946494 17947241 747 212
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Nanog ESGSE20650 17778139 17778912 773 19656
TFAP2C MCF7GSE21234 17793363 17793819 456 4591
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 17945921 17947135 1214 0
ER Fulvestrant-MCF7GSE14664 17894279 17894328 49 0
H3K4me2 HCT116GSE10453 17945240 17946057 817 0
H3K4me3 colorectalcancer 17945128 17946243 1115 0
H3ac HepG2E 17944758 17946530 1772 0
Oct1 H2O2-HelaGSE14283 17847636 17847668 32 0
Oct1 H2O2-HelaGSE14283 17912418 17912447 29 0
Oct1 HelaGSE14283 17847635 17847665 30 0
PHF8 HeLaGSE20725 17945836 17947386 1550 0
TAF HelaGSE8489 17935866 17936182 316 0
TAF HelaGSE8489 17944827 17946392 1565 0
TAF k562GSE8489 17944718 17946606 1888 0
USF1 HepG2E 17945341 17946569 1228 0
hScc1 G2GSE9613 17945709 17947171 1462 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
23689 EST chr7 17687888 17688542 113 mRNA SNX13 chr7 17605697 17753359Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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