AutismKB 2.0

Annotation Detail for RTF1


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Basic Information Top
Gene Symbol:RTF1 ( GTL7,KIAA0252 )
Gene Full Name: Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Band: 15q15.1
Quick LinksEntrez ID:23168; OMIM: 611633; Uniprot ID:RTF1_HUMAN; ENSEMBL ID: ENSG00000137815; HGNC ID: 28996
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
413N6-acetyllysine.
697Phosphoserine.
Location(AA) Modifications Resource
20PhosphoserinePhospho.ELM 6.0
657Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
20PhosphoserineHMM predict
20Phosphoserine(CK2)HMM predict
20Phosphoserine(CK1)HMM predict
37Phosphoserine(PKB)HMM predict
37Phosphoserine(PKG)HMM predict
37Phosphoserine(PKA)HMM predict
39PhosphoserineHMM predict
39Phosphoserine(CK1)HMM predict
47O-linkedHMM predict
47Phosphoserine(ATM)HMM predict
47O-linkedHMM predict
55Phosphoserine(IKK)HMM predict
55Phosphoserine(CK1)HMM predict
58Phosphoserine(CK1)HMM predict
60Phosphoserine(CK2)HMM predict
60Phosphoserine(CK1)HMM predict
85Phosphothreonine(PKC)HMM predict
91N-linkedHMM predict
96Phosphoserine(CK2)HMM predict
99Phosphoserine(ATM)HMM predict
103Phosphoserine(CK2)HMM predict
103Phosphoserine(IKK)HMM predict
107Phosphoserine(CK2)HMM predict
108Phosphoserine(CK2)HMM predict
116Phosphoserine(CK2)HMM predict
118Phosphoserine(CK1)HMM predict
120O-linkedHMM predict
120Phosphoserine(IKK)HMM predict
121N-linkedHMM predict
122Phosphoserine(CK1)HMM predict
131Phosphoserine(CK1)HMM predict
131Phosphoserine(IKK)HMM predict
132Phosphoserine(CK1)HMM predict
133Phosphoserine(CK2)HMM predict
133Phosphoserine(CK1)HMM predict
190Phosphothreonine(PKC)HMM predict
213Phosphothreonine(PKA)HMM predict
218Phosphoserine(ATM)HMM predict
254N-linkedHMM predict
272Phosphotyrosine(Syk)HMM predict
273Phosphoserine(CK1)HMM predict
273Phosphoserine(CK2)HMM predict
273Phosphoserine(CK2)HMM predict
284Phosphoserine(CK1)HMM predict
285Phosphoserine(CK2)HMM predict
285Phosphoserine(CK1)HMM predict
292O-linkedHMM predict
292Phosphoserine(CK1)HMM predict
295Phosphoserine(CK1)HMM predict
296Phosphoserine(CK2)HMM predict
296Phosphoserine(PKB)HMM predict
297Phosphoserine(CK2)HMM predict
297PhosphoserineHMM predict
310Phosphoserine(ATM)HMM predict
314Phosphoserine(IKK)HMM predict
325Phosphoserine(PKG)HMM predict
360Phosphotyrosine(SRC)HMM predict
438Phosphoserine(CK1)HMM predict
469Phosphotyrosine(Abl)HMM predict
516N-linkedHMM predict
597Phosphoserine(CK1)HMM predict
608Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015138
  • Location:chr15 39496607-39563045
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K4me2 HCT116GSE10453 39495915 39496165 250 568
H3ac HepG2E 39495915 39496283 368 509
Myc K562GSE19551 39495906 39496756 850 277
PHF8 293TGSE20725 39495806 39497254 1448 78
PHF8 HeLaGSE20725 39495833 39497369 1536 7
hScc1 BcellGSE12603 39496165 39496752 587 149
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 39563550 39563587 37 523
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF JurkatGSE12889 39545327 39545580 253 0
CTCF G2GSE9613 39496348 39497079 731 0
CTCF G2GSE9613 39545293 39545833 540 0
Fos K562GSE19551 39517636 39518138 502 0
Fos K562GSE19551 39556517 39557221 704 0
H3K4me3 colorectalcancer 39496869 39497957 1088 0
H3ac HepG2E 39497115 39497957 842 0
KLF4 hESGSE17917 39506169 39506342 173 0
NFkBII GM10847GSE19485 39562194 39563492 1298 0
NFkBII GM12878GSE19485 39562006 39563467 1461 0
Oct1 HelaGSE14283 39555962 39555995 33 0
Oct1 HelaGSE14283 39558766 39558804 38 0
Oct4 hESGSE17917 39506154 39506335 181 0
PHF8 Hs68plusFBSGSE20725 39495749 39497778 2029 0
Pol3 K562GSE19551 39505887 39506650 763 0
hScc1 BcellGSE12603 39545149 39545833 684 0
hScc1 CdLSGSE12603 39545149 39545833 684 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-138 hsa-mir-138-2 16 19888451
hsa-miR-138 hsa-mir-138-1 3 19888451
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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