Annotation Detail for LARP4B

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Basic Information Top

Gene Symbol:	LARP4B ( DKFZp686M23113,KIAA0217,LARP5 )
Gene Full Name:	La ribonucleoprotein domain family, member 4B
Band:	10p15.3
Quick Links	Entrez ID:23185; OMIM: NA; Uniprot ID:LAR4B_HUMAN; ENSEMBL ID: ENSG00000107929; HGNC ID: 28987
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:17 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
424	Phosphoserine.
434	Phosphoserine.
451	Phosphoserine.
498	Phosphoserine (By similarity).
516	Phosphoserine.
518	Phosphothreonine.
524	Phosphoserine.
566	Phosphothreonine.
568	Phosphoserine.
601	Phosphoserine.
663	Phosphoserine.
664	Phosphoserine.
718	Phosphoserine.
724	N6-acetyllysine.
727	Phosphoserine.
732	Phosphothreonine.
736	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_015155
Location:chr10 845483-921701
strand:-

Upstream the gene:0 results
Downstream the gene:8 results
Inside the gene:4 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FOXA1	MCF7	GSE15244	829616	830216	600	15568
GABP	Hela	GSE8489	829616	830216	600	15568
RARA	MCF7	GSE15244	829324	830216	892	15714
RARG	MCF7	GSE15244	829616	830216	600	15568
TFAP2C	MCF7	GSE21234	830202	830808	606	14979
hScc1	Bcell	GSE12603	825269	826214	945	19742
hScc1	Bcell	GSE12603	829616	830216	600	15568
hScc1	G2	GSE9613	825269	825898	629	19900

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Nanog	hES	GSE18292	883915	884147	232	0
RARG	MCF7	GSE15244	845773	846123	350	0
RARG	MCF7	GSE15244	901103	901532	429	0
Stat6	IL-4-hr4	GSE17850	901277	901688	411	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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