AutismKB 2.0

Annotation Detail for ATG4B


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Basic Information Top
Gene Symbol:ATG4B ( APG4B,AUTL1,MGC1353 )
Gene Full Name: ATG4 autophagy related 4 homolog B (S. cerevisiae)
Band: 2q37.3
Quick LinksEntrez ID:23192; OMIM: 611338; Uniprot ID:ATG4B_HUMAN; ENSEMBL ID: ENSG00000168397; HGNC ID: 20790
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1N-acetylmethionine.
34Phosphoserine (By similarity).
316Phosphoserine.
383Phosphoserine.
392Phosphoserine.
Location(AA) Modifications Resource
34Phosphoserine (By similarity).Swiss-Prot 53.0
383Phosphoserine.Swiss-Prot 53.0
383PhosphoserinePhospho.ELM 6.0
392Phosphoserine.Swiss-Prot 53.0
392PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
34Phosphoserine(CAMK2)HMM predict
37Phosphothreonine(CK2)HMM predict
383Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_178326
  • Location:chr2 242225699-242261936
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
P300 T30-glioblastomaGSE21026 242224932 242226294 1362 87
Rb QuiescentGSE19898 242225601 242225758 157 20
Rb shRbSenescenceGSE19898 242225471 242225787 316 71
p130 SenescentGSE19898 242225398 242225894 496 54
p130 shRbQuiescentGSE19898 242225348 242225809 461 121
p130 shRbSenescentGSE19898 242225392 242225751 359 128
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 242247508 242247651 143 0
CTCF CD4GSE12889 242253621 242253750 129 0
CTCF CD4SISSRdata 242247508 242247651 143 0
CTCF CD4SISSRdata 242253621 242253750 129 0
CTCF G2GSE9613 242229842 242230032 190 0
CTCF G2GSE9613 242244242 242244528 286 0
CTCF G2GSE9613 242247356 242247749 393 0
CTCF G2GSE9613 242253232 242253742 510 0
CTCF G2GSE9613 242260784 242261655 871 0
ETS1 JurkatGSE17954 242225020 242226530 1510 0
H3K4me3 colorectalcancer 242226467 242226943 476 0
H3ac HepG2E 242226284 242226979 695 0
H3ac HepG2E 242228125 242229321 1196 0
H3ac HepG2E 242229667 242230175 508 0
H3ac HepG2E 242231964 242232133 169 0
H3ac HepG2E 242232442 242232713 271 0
HIF1 HypoHepG2 242233122 242233916 794 0
TAF k562GSE8489 242226210 242226979 769 0
TFAP2C MCF7GSE21234 242245893 242246845 952 0
USF2 HepG2E 242246448 242246836 388 0
hScc1 BcellGSE12603 242247356 242247784 428 0
hScc1 G2GSE9613 242247309 242247749 440 0
hScc1 G2GSE9613 242248972 242249310 338 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
15920 mRNA APG4B chr2 242296617 242333259 28 mRNA THAP4 chr2 242243810 242296645Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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