AutismKB 2.0

Annotation Detail for TRIM2


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Basic Information Top
Gene Symbol:TRIM2 ( KIAA0517,RNF86 )
Gene Full Name: tripartite motif-containing 2
Band: 4q31.3
Quick LinksEntrez ID:23321; OMIM: NA; Uniprot ID:TRIM2_HUMAN; ENSEMBL ID: ENSG00000109654; HGNC ID: 15974
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
440Phosphoserine (By similarity).
Location(AA) Modifications Resource
Location(AA) Modification Resource
26S-palmitoylHMM predict
66Phosphothreonine(PKA)HMM predict
93Phosphothreonine(MAPK)HMM predict
102Phosphoserine(CK1)HMM predict
239Phosphoserine(IKK)HMM predict
256N-linkedHMM predict
326O-linkedHMM predict
345Phosphoserine(IKK)HMM predict
386N-linkedHMM predict
389Phosphotyrosine(SRC)HMM predict
415Phosphoserine(CDC2)HMM predict
428Phosphoserine(IKK)HMM predict
428Phosphoserine(MAPK)HMM predict
440Phosphoserine(CDC2)HMM predict
456Phosphoserine(IKK)HMM predict
460Phosphothreonine(PKC)HMM predict
615MethylarginineHMM predict
707N-linkedHMM predict
736S-farnesylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015271
  • Location:chr4 154345067-154479917
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 154328103 154328307 204 16863
ER E2-MCF7GSE14664 154335170 154335250 80 9858
Oct1 HelaGSE14283 154339028 154339114 86 5997
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 154459420 154459638 218 0
CTCF CD4SISSRdata 154459420 154459638 218 0
CTCF G2GSE9613 154363016 154363858 842 0
CTCF G2GSE9613 154373450 154373849 399 0
CTCF G2GSE9613 154383191 154383844 653 0
CTCF G2GSE9613 154387733 154387958 225 0
CTCF G2GSE9613 154400796 154400925 129 0
CTCF G2GSE9613 154416362 154416753 391 0
CTCF G2GSE9613 154435825 154436373 548 0
CTCF G2GSE9613 154459354 154459757 403 0
ER E2-MCF7GSE14664 154350258 154350299 41 0
ER E2-MCF7GSE14664 154386679 154386711 32 0
ER E2-MCF7GSE14664 154454022 154454064 42 0
ER E2-MCF7GSE14664 154473742 154473795 53 0
ER MCF7GSE19013 154363092 154363777 685 0
ER MCF7GSE19013 154387101 154387699 598 0
FOXA1 MCF7GSE15244 154349821 154350618 797 0
FOXA1 MCF7GSE15244 154359164 154360115 951 0
FOXA1 eGFPGSE10845 154349821 154350618 797 0
FOXA1 eGFPGSE10845 154359164 154360115 951 0
FoxA1 MCF7MACSdata 154359527 154359893 366 0
FoxA1 MCF7MACSdata 154385654 154385850 196 0
Myc hESGSE17917 154389076 154389379 303 0
Oct1 H2O2-HelaGSE14283 154401885 154401913 28 0
Oct1 H2O2-HelaGSE14283 154413694 154413723 29 0
Oct1 H2O2-HelaGSE14283 154414981 154415011 30 0
Oct1 HelaGSE14283 154350273 154350309 36 0
Oct1 HelaGSE14283 154353957 154354009 52 0
Oct1 HelaGSE14283 154361777 154361824 47 0
Oct1 HelaGSE14283 154384859 154384900 41 0
Oct1 HelaGSE14283 154400246 154400274 28 0
Oct1 HelaGSE14283 154413692 154413727 35 0
Oct1 HelaGSE14283 154479776 154479804 28 0
P300 T0-glioblastomaGSE21026 154382514 154383483 969 0
RARA MCF7GSE15244 154345866 154346695 829 0
RNAII Tamoxifen-MCF7GSE14664 154425889 154425930 41 0
STAT1 HeLaGSE12782 154373084 154375843 2759 0
STAT1 HeLaGSE12783 154373084 154375843 2759 0
TFAP2C MCF7GSE21234 154348273 154348611 338 0
TFAP2C MCF7GSE21234 154363099 154363571 472 0
TFAP2C MCF7GSE21234 154389437 154390614 1177 0
TFAP2C MCF7GSE21234 154437651 154438075 424 0
hScc1 BcellGSE12603 154363341 154363821 480 0
hScc1 BcellGSE12603 154373414 154373570 156 0
hScc1 BcellGSE12603 154435864 154436152 288 0
hScc1 CdLSGSE12603 154459177 154459721 544 0
hScc1 G2GSE9613 154362860 154363900 1040 0
p130 QuiescentGSE19898 154362372 154362589 217 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-1 hsa-mir-1-2 18 15685193
hsa-miR-1 hsa-mir-1-1 20 15685193
hsa-miR-124 hsa-mir-124-1 8 15685193
hsa-miR-124 hsa-mir-124-2 8 15685193
hsa-miR-124 hsa-mir-124-3 20 15685193
hsa-miR-373 hsa-mir-373 19 15685193
hsa-miR-373* hsa-mir-373 19 15685193
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
181 Unknown MicroArray miR-1 TRIM2 n_a 15685193
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000109654 "cardiac and skeletal muscles, cardiogenesis" n_a n_a "lymphocyte, muscle cell" "benign tumour, malignant tumour, carcinoma, sarcoma"
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
20343 mRNA TRIM2 chr4 154483222 154618073 1310 mRNA ANXA2P1 chr4 154586225 154587535 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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