AutismKB 2.0

Annotation Detail for SYNM


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Basic Information Top
Gene Symbol:SYNM ( DMN,KIAA0353,SYN )
Gene Full Name: synemin, intermediate filament protein
Band: 15q26.3
Quick LinksEntrez ID:23336; OMIM: 606087; Uniprot ID:SYNEM_HUMAN; ENSEMBL ID: ENSG00000182253; HGNC ID: 24466
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
429Phosphoserine.
598Phosphothreonine.
653Phosphoserine.
1044Phosphoserine.
1049Phosphoserine.
1181Phosphoserine.
1184Phosphoserine.
1435Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015286
  • Location:chr15 97462808-97493321
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 97458387 97458581 194 4325
CTCF CD4SISSRdata 97458387 97458581 194 4325
CTCF G2GSE9613 97457961 97458577 616 4540
hScc1 BcellGSE12603 97455950 97456303 353 6682
hScc1 BcellGSE12603 97458134 97458712 578 4386
hScc1 CdLSGSE12603 97457925 97458883 958 4405
hScc1 G2GSE9613 97462443 97462925 482 125
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 97462443 97463858 1415 0
CTCF G2GSE9613 97478930 97479157 227 0
ER Fulvestrant-MCF7GSE14664 97481702 97481739 37 0
ER MCF7GSE19013 97492544 97493231 687 0
Oct1 HelaGSE14283 97491823 97491857 34 0
Oct1 HelaGSE14283 97492584 97492613 29 0
PHF8 HeLaGSE20725 97462489 97463895 1406 0
Rb QuiescentGSE19898 97464957 97465090 133 0
hScc1 BcellGSE12603 97462443 97463787 1344 0
hScc1 CdLSGSE12603 97462443 97463820 1377 0
p130 SenescentGSE19898 97463476 97463658 182 0
p130 SenescentGSE19898 97481358 97482097 739 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
9357 mRNA DMN chr15 97462808 97493311 133 mRNA LOC51039 chr15 97492315 97492448Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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