AutismKB 2.0

Annotation Detail for UBR4


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Basic Information Top
Gene Symbol:UBR4 ( FLJ41863,KIAA0462,KIAA1307,RBAF600,ZUBR1,p600 )
Gene Full Name: ubiquitin protein ligase E3 component n-recognin 4
Band: 1p36.13
Quick LinksEntrez ID:23352; OMIM: 609890; Uniprot ID:UBR4_HUMAN; ENSEMBL ID: ENSG00000127481; HGNC ID: 30313
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
178Phosphoserine.
181Phosphoserine.
360Phosphothreonine.
365Phosphoserine (By similarity).
619Phosphoserine.
620Phosphoserine.
1084N6-acetyllysine.
2715Phosphothreonine.
2718Phosphoserine.
2719Phosphoserine.
2722Phosphoserine (By similarity).
2724Phosphothreonine (By similarity).
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020765
  • Location:chr1 19273588-19409332
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 19409327 19409667 340 165
ETS1 JurkatGSE17954 19408749 19410112 1363 98
H3K4me2 HCT116GSE10453 19409703 19410326 623 682
H3K4me3 colorectalcancer 19409703 19410326 623 682
H3ac HepG2E 19409505 19410326 821 583
H3ac HepG2E 19411312 19412705 1393 2676
Myc hESGSE17917 19409117 19409614 497 33
PHF8 293TGSE20725 19408688 19410148 1460 86
RARA MCF7GSE15244 19409593 19410168 575 548
RARG MCF7GSE15244 19409469 19410132 663 468
TAF HelaGSE8489 19409703 19410326 623 682
TAF k562GSE8489 19409469 19410326 857 565
p130 shRbSenescentGSE19898 19409095 19410146 1051 288
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 19253521 19253848 327 19904
CTCF G2GSE9613 19257376 19258141 765 15830
CTCF G2GSE9613 19259119 19259308 189 14375
CTCF G2GSE9613 19259729 19259940 211 13754
CTCF G2GSE9613 19261181 19262529 1348 11734
CTCF G2GSE9613 19263306 19263730 424 10071
CTCF G2GSE9613 19265980 19266621 641 7288
Oct1 H2O2-HelaGSE14283 19259568 19259605 37 14002
Oct1 HelaGSE14283 19259569 19259601 32 14004
hScc1 BcellGSE12603 19259154 19259308 154 14358
hScc1 BcellGSE12603 19261083 19262594 1511 11750
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 19295391 19295616 225 0
CTCF CD4GSE12889 19312790 19313096 306 0
CTCF CD4GSE12889 19378706 19378959 253 0
CTCF CD4SISSRdata 19295391 19295616 225 0
CTCF CD4SISSRdata 19312790 19313096 306 0
CTCF CD4SISSRdata 19378706 19378959 253 0
CTCF G2GSE9613 19276865 19277138 273 0
CTCF G2GSE9613 19295343 19295630 287 0
CTCF G2GSE9613 19311666 19311981 315 0
CTCF G2GSE9613 19312428 19312988 560 0
CTCF G2GSE9613 19313913 19314085 172 0
CTCF G2GSE9613 19338937 19339185 248 0
CTCF G2GSE9613 19339879 19340236 357 0
ER Fulvestrant-MCF7GSE14664 19374556 19374649 93 0
GABP k562GSE8489 19407609 19408621 1012 0
H3K4me2 HCT116GSE10453 19408112 19408924 812 0
H3K4me3 colorectalcancer 19407609 19408986 1377 0
H3ac HepG2E 19401370 19401860 490 0
H3ac HepG2E 19406074 19406362 288 0
H3ac HepG2E 19407575 19408986 1411 0
LIN9 SGSE7516 19407793 19408278 485 0
NFkBII GM10847GSE19485 19286474 19287690 1216 0
NFkBII GM12878GSE19485 19286286 19288727 2441 0
NFkBII GM12892GSE19485 19286418 19288633 2215 0
Nanog ESGSE20650 19338550 19339031 481 0
Oct1 H2O2-HelaGSE14283 19366210 19366242 32 0
Oct1 H2O2-HelaGSE14283 19369618 19369646 28 0
Oct1 HelaGSE14283 19291917 19291950 33 0
Oct1 HelaGSE14283 19366210 19366239 29 0
Oct1 HelaGSE14283 19369610 19369655 45 0
PHF8 Hs68plusFBSGSE20725 19408481 19410110 1629 0
TAF HelaGSE8489 19407836 19408852 1016 0
TAF k562GSE8489 19368320 19368528 208 0
TAF k562GSE8489 19407575 19408986 1411 0
TFAP2C MCF7GSE21234 19291908 19292198 290 0
USF1 HepG2E 19401370 19401860 490 0
VDR GM10861-stimGSE22484 19365324 19366467 1143 0
hScc1 BcellGSE12603 19321748 19321994 246 0
hScc1 BcellGSE12603 19408924 19409505 581 0
p130 SenescentGSE19898 19407875 19408221 346 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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