AutismKB 2.0

Annotation Detail for PSD3


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:PSD3 ( DKFZp761K1423,EFA6R,HCA67 )
Gene Full Name: pleckstrin and Sec7 domain containing 3
Band: 8p22
Quick LinksEntrez ID:23362; OMIM: NA; Uniprot ID:PSD3_HUMAN; ENSEMBL ID: ENSG00000156011; HGNC ID: 19093
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
770Phosphoserine.
1011Phosphoserine.
1012Phosphoserine (By similarity).
1020Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
17O-linkedHMM predict
19Phosphotyrosine(INSR)HMM predict
62N-linkedHMM predict
67N-linkedHMM predict
234Phosphoserine(CDC2)HMM predict
234Phosphoserine(IKK)HMM predict
236Phosphoserine(CK2)HMM predict
238PhosphoserineHMM predict
238Phosphoserine(CK2)HMM predict
244N-linkedHMM predict
291Phosphothreonine(MAPK)HMM predict
291Phosphothreonine(CDC2)HMM predict
317Phosphotyrosine(Jak)HMM predict
317Phosphotyrosine(Syk)HMM predict
324Phosphoserine(CK1)HMM predict
324Phosphoserine(CK2)HMM predict
368Phosphoserine(IKK)HMM predict
414Phosphoserine(PKG)HMM predict
459Phosphotyrosine(Syk)HMM predict
497Phosphoserine(IKK)HMM predict
497Phosphoserine(CK1)HMM predict
515N-linkedHMM predict
533ValineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015310
  • Location:chr8 18429092-18915475
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 18915261 18915984 723 147
NRSF pAbJurkat 18915261 18915785 524 48
PHF8 293TGSE20725 18914917 18916306 1389 136
RARG MCF7GSE15244 18916422 18916790 368 1131
hScc1 BcellGSE12603 18915383 18915984 601 208
hScc1 BcellGSE12603 18916636 18916790 154 1238
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 18813902 18814347 445 0
CTCF CD4SISSRdata 18813902 18814347 445 0
CTCF G2GSE9613 18770106 18770511 405 0
CTCF G2GSE9613 18814490 18814706 216 0
FOXA1 DLD1GSE12801 18780404 18780900 496 0
FOXA1 DLD1GSE12801 18905406 18905869 463 0
FOXA1 MCF7GSE15244 18732624 18732764 140 0
FOXA1 MCF7GSE15244 18869545 18869857 312 0
FOXA1 MCF7GSE15244 18876119 18876439 320 0
FOXA1 MCF7GSE15244 18905190 18905869 679 0
FOXA1 MCF7GSE15244 18909327 18909582 255 0
FOXA1 MCF7GSE15244 18914633 18915020 387 0
FoxA1 MCF7MACSdata 18810288 18810518 230 0
FoxA1 MCF7MACSdata 18825315 18825529 214 0
FoxA1 MCF7MACSdata 18856689 18856882 193 0
FoxA1 MCF7MACSdata 18905509 18905685 176 0
FoxA1 MCF7MACSdata 18909380 18909543 163 0
FoxA1 MCF7MACSdata 18911865 18912239 374 0
H3K4me2 HCT116GSE10453 18914205 18915137 932 0
H3K4me3 colorectalcancer 18913999 18915020 1021 0
Myc hESGSE17917 18915252 18915660 408 0
Nanog hESGSE18292 18806626 18806790 164 0
Nanog hESGSE18292 18875882 18876259 377 0
Oct1 H2O2-HelaGSE14283 18862456 18862496 40 0
Oct1 H2O2-HelaGSE14283 18894111 18894152 41 0
Oct1 H2O2-HelaGSE14283 18899559 18899591 32 0
Oct1 HelaGSE14283 18793569 18793599 30 0
Oct1 HelaGSE14283 18862453 18862498 45 0
Oct1 HelaGSE14283 18869710 18869747 37 0
Oct1 HelaGSE14283 18892299 18892333 34 0
Oct1 HelaGSE14283 18894111 18894152 41 0
P300 T30-glioblastomaGSE21026 18819328 18820136 808 0
PolII HeLaGSE12783 18914201 18915857 1656 0
RARA MCF7GSE15244 18856475 18856745 270 0
RARA MCF7GSE15244 18905190 18905980 790 0
RARG MCF7GSE15244 18905190 18905905 715 0
RNAII Tamoxifen-MCF7GSE14664 18846528 18846589 61 0
TAF HelaGSE8489 18852557 18852731 174 0
TFAP2C MCF7GSE21234 18879807 18880116 309 0
hScc1 BcellGSE12603 18710593 18710892 299 0
hScc1 BcellGSE12603 18770043 18770589 546 0
hScc1 BcellGSE12603 18813865 18814597 732 0
hScc1 BcellGSE12603 18903294 18903471 177 0
hScc1 CdLSGSE12603 18715885 18716535 650 0
hScc1 CdLSGSE12603 18769902 18770589 687 0
hScc1 CdLSGSE12603 18813484 18814597 1113 0
hScc1 G2GSE9613 18770043 18770475 432 0
hScc1 G2GSE9613 18813865 18814742 877 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
25130 mRNA chr8 18622694 18636195 13501 mRNA PSD3 chr8 18432348 18710666 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved