AutismKB 2.0

Annotation Detail for NUDCD3


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Basic Information Top
Gene Symbol:NUDCD3 ( KIAA1068,NudCL )
Gene Full Name: NudC domain containing 3
Band: 7p13
Quick LinksEntrez ID:23386; OMIM: 610296; Uniprot ID:NUDC3_HUMAN; ENSEMBL ID: ENSG00000015676; HGNC ID: 22208
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
146Phosphoserine.
340Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
48PhosphoserineHMM predict
50MethylarginineHMM predict
98Phosphothreonine(PKC)HMM predict
146Phosphoserine(ATM)HMM predict
189N-linkedHMM predict
216Phosphoserine(CAMK2)HMM predict
220Phosphoserine(CK2)HMM predict
220Phosphoserine(CK1)HMM predict
248Phosphothreonine(PKC)HMM predict
264N-linkedHMM predict
346ArginineHMM predict
347PhenylalanineHMM predict
349PhenylalanineHMM predict
350PhenylalanineHMM predict
351MethionineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015332
  • Location:chr7 44389715-44496770
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 44496187 44497474 1287 60
Fos K562GSE19551 44496775 44497327 552 281
Oct1 H2O2-HelaGSE14283 44502643 44502670 27 5886
Oct1 HelaGSE14283 44502640 44502671 31 5885
Oct1 HelaGSE14283 44503045 44503107 62 6306
USF2 HepG2E 44496973 44497333 360 383
hScc1 CdLSGSE12603 44496361 44497333 972 77
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 44380485 44380812 327 9067
CTCF G2GSE9613 44381581 44381846 265 8002
CTCF G2GSE9613 44384305 44384577 272 5275
CTCF G2GSE9613 44387406 44387757 351 2134
Rb SenescentGSE19898 44384734 44385099 365 4799
hScc1 BcellGSE12603 44379559 44379813 254 10030
p63 keratinocytesGSE17611 44383685 44384652 967 5547
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 44437547 44437722 175 0
CTCF CD4GSE12889 44483524 44483782 258 0
CTCF CD4SISSRdata 44437547 44437722 175 0
CTCF CD4SISSRdata 44483524 44483782 258 0
CTCF G2GSE9613 44398106 44398893 787 0
CTCF G2GSE9613 44406304 44406654 350 0
CTCF G2GSE9613 44424254 44424656 402 0
CTCF G2GSE9613 44433450 44433755 305 0
CTCF G2GSE9613 44437414 44437758 344 0
CTCF G2GSE9613 44447722 44448127 405 0
CTCF G2GSE9613 44467815 44468014 199 0
CTCF G2GSE9613 44469282 44469572 290 0
CTCF G2GSE9613 44472388 44472736 348 0
CTCF G2GSE9613 44473982 44474293 311 0
CTCF G2GSE9613 44483019 44483917 898 0
CTCF G2GSE9613 44490140 44490320 180 0
CTCF G2GSE9613 44496290 44496940 650 0
ER E2-MCF7GSE14664 44459164 44459247 83 0
FOXA1 MCF7GSE15244 44495966 44496502 536 0
FoxA1 MCF7MACSdata 44484218 44484440 222 0
GABP k562GSE8489 44491702 44493748 2046 0
GABP k562GSE8489 44494537 44494957 420 0
GABP k562GSE8489 44495299 44497333 2034 0
H3K4me3 colorectalcancer 44495299 44496219 920 0
H3ac HepG2E 44495299 44496325 1026 0
Myc K562GSE19551 44483426 44483932 506 0
Nanog ESGSE20650 44414666 44415155 489 0
Nanog hESGSE18292 44414771 44415217 446 0
Oct1 HelaGSE14283 44427274 44427303 29 0
Oct1 HelaGSE14283 44439890 44439922 32 0
Oct1 HelaGSE14283 44458005 44458038 33 0
Oct4 hESGSE17917 44483646 44483889 243 0
P300 T30-glioblastomaGSE21026 44495658 44497725 2067 0
PHF8 293TGSE20725 44495911 44497472 1561 0
PHF8 HeLaGSE20725 44495800 44497334 1534 0
PHF8 Hs68plusFBSGSE20725 44495834 44497511 1677 0
TAF HelaGSE8489 44435738 44435978 240 0
TAF HelaGSE8489 44495299 44496430 1131 0
USF1 HepG2E 44495299 44497333 2034 0
hScc1 BcellGSE12603 44437523 44437758 235 0
hScc1 BcellGSE12603 44440725 44441146 421 0
hScc1 BcellGSE12603 44469539 44469902 363 0
hScc1 BcellGSE12603 44482870 44483917 1047 0
hScc1 BcellGSE12603 44489742 44490210 468 0
hScc1 CdLSGSE12603 44483127 44483917 790 0
hScc1 G2GSE9613 44482985 44483774 789 0
p130 SenescentGSE19898 44455425 44455743 318 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
23936 EST chr7 44280682 44281219 537 mRNA NUDCD3 chr7 44196429 44303486 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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