AutismKB 2.0

Annotation Detail for PHF3


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Basic Information Top
Gene Symbol:PHF3 ( KIAA0244,MGC142210,MGC142212 )
Gene Full Name: PHD finger protein 3
Band: 6q12
Quick LinksEntrez ID:23469; OMIM: 607789; Uniprot ID:PHF3_HUMAN; ENSEMBL ID: ENSG00000118482; HGNC ID: 8921
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
283Phosphoserine.
473Phosphoserine.
677Phosphoserine.
678Phosphoserine.
680Phosphoserine.
1133Phosphoserine.
1178Phosphoserine.
1184Phosphoserine.
1614Phosphoserine.
1618Phosphoserine.
1642Phosphoserine.
1722Phosphoserine.
1724Phosphoserine.
1925Phosphoserine.
1927Phosphoserine.
Location(AA) Modifications Resource
283Phosphoserine.Swiss-Prot 53.0
283PhosphoserinePhospho.ELM 6.0
680Phosphoserine.Swiss-Prot 53.0
680PhosphoserinePhospho.ELM 6.0
1133Phosphoserine.Swiss-Prot 53.0
1133PhosphoserinePhospho.ELM 6.0
1614PhosphoserinePhospho.ELM 6.0
1614Phosphoserine.Swiss-Prot 53.0
1642Phosphoserine.Swiss-Prot 53.0
1927Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
37Phosphoserine(ATM)HMM predict
50Phosphoserine(ATM)HMM predict
99N-linkedHMM predict
125Phosphoserine(CDC2)HMM predict
125Phosphoserine(CDK)HMM predict
129Phosphoserine(CDK)HMM predict
129PhosphoserineHMM predict
129Phosphoserine(CDC2)HMM predict
150Phosphoserine(PKG)HMM predict
162Phosphoserine(PKC)HMM predict
179Phosphoserine(ATM)HMM predict
214O-linkedHMM predict
220Phosphoserine(IKK)HMM predict
223Phosphoserine(CK2)HMM predict
283Phosphoserine(CDC2)HMM predict
322Phosphoserine(CK1)HMM predict
341Phosphoserine(CK1)HMM predict
354N-linkedHMM predict
358N-linkedHMM predict
417N-linkedHMM predict
420N-linkedHMM predict
473Phosphoserine(CK1)HMM predict
473Phosphoserine(IKK)HMM predict
479Phosphoserine(IKK)HMM predict
500N-linkedHMM predict
532Phosphothreonine(PKA)HMM predict
537Phosphoserine(ATM)HMM predict
595Phosphoserine(IKK)HMM predict
678Phosphoserine(PKB)HMM predict
680Phosphoserine(IKK)HMM predict
682Phosphoserine(CK1)HMM predict
696Phosphothreonine(PKC)HMM predict
702Phosphoserine(PKB)HMM predict
702Phosphoserine(CK2)HMM predict
706Phosphoserine(CK2)HMM predict
738S-palmitoylHMM predict
752Phosphoserine(ATM)HMM predict
752Phosphoserine(IKK)HMM predict
764Phosphotyrosine(Jak)HMM predict
764Phosphotyrosine(INSR)HMM predict
764Phosphotyrosine(Jak)HMM predict
834Phosphoserine(PKC)HMM predict
839N-linkedHMM predict
869Phosphoserine(CK1)HMM predict
869PhosphoserineHMM predict
869Phosphoserine(PKG)HMM predict
869Phosphoserine(PKB)HMM predict
884O-linkedHMM predict
918O-linkedHMM predict
944Phosphothreonine(PKA)HMM predict
1006Phosphothreonine(MAPK)HMM predict
1082N-linkedHMM predict
1102Phosphoserine(CK1)HMM predict
1107Phosphoserine(CK1)HMM predict
1148Phosphoserine(PKA)HMM predict
1160Phosphoserine(CK1)HMM predict
1178Phosphoserine(IKK)HMM predict
1184O-linkedHMM predict
1184Phosphoserine(CDC2)HMM predict
1234Phosphotyrosine(INSR)HMM predict
1275Phosphothreonine(PKA)HMM predict
1356Phosphoserine(IKK)HMM predict
1481Phosphotyrosine(Abl)HMM predict
1529N-linkedHMM predict
1543O-linkedHMM predict
1549O-linkedHMM predict
1554O-linkedHMM predict
1608N-linkedHMM predict
1612N-linkedHMM predict
1628N-linkedHMM predict
1634N-linkedHMM predict
1642Phosphoserine(CDC2)HMM predict
1659Phosphoserine(ATM)HMM predict
1724Phosphoserine(CK1)HMM predict
1758Phosphoserine(PKA)HMM predict
1773O-linkedHMM predict
1786O-linkedHMM predict
1788Phosphoserine(CAMK2)HMM predict
1788Phosphoserine(CDC2)HMM predict
1788PhosphoserineHMM predict
1788O-linkedHMM predict
1788Phosphoserine(IKK)HMM predict
1792O-linkedHMM predict
1794N-linkedHMM predict
1796Phosphoserine(CDC2)HMM predict
1873Phosphoserine(ATM)HMM predict
1885Phosphotyrosine(Syk)HMM predict
1898Phosphoserine(CK1)HMM predict
1952Phosphoserine(ATM)HMM predict
1952Phosphoserine(CAMK2)HMM predict
1961Phosphoserine(PKG)HMM predict
2004Phosphotyrosine(INSR)HMM predict
2004Phosphotyrosine(Jak)HMM predict
2004Phosphotyrosine(Syk)HMM predict
2013Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015153
  • Location:chr6 64414389-64482363
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 64403600 64404349 749 10415
H3ac HepG2E 64402336 64403314 978 11565
H3ac HepG2E 64404556 64405259 703 9482
H3ac HepG2E 64405959 64406347 388 8237
Nanog hESGSE18292 64402387 64402873 486 11760
PHF8 HeLaGSE20725 64403371 64404860 1489 10274
Rb QuiescentGSE19898 64404094 64404229 135 10228
Rb SenescentGSE19898 64403603 64404257 654 10460
Rb shRbSenescenceGSE19898 64404068 64404248 180 10232
Sox2 hESGSE18292 64402369 64402855 486 11778
TAF k562GSE8489 64404629 64405816 1187 9167
USF1 HepG2E 64401809 64403431 1622 11770
USF2 HepG2E 64402457 64403349 892 11487
hScc1 BcellGSE12603 64403530 64404246 716 10502
hScc1 G2GSE9613 64403530 64404309 779 10470
p130 QuiescentGSE19898 64403997 64404222 225 10280
p130 SenescentGSE19898 64403984 64404241 257 10277
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER Fulvestrant-MCF7GSE14664 64493563 64493601 38 11219
Oct1 H2O2-HelaGSE14283 64493563 64493594 31 11215
Oct1 H2O2-HelaGSE14283 64497598 64497648 50 15260
Oct1 HelaGSE14283 64493563 64493596 33 11216
Oct1 HelaGSE14283 64497598 64497644 46 15258
Rb SenescentGSE19898 64499843 64499988 145 17552
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 64448390 64448418 28 0
Oct1 HelaGSE14283 64448390 64448431 41 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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