Annotation Detail for CLCF1

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Basic Information Top

Gene Symbol:	CLCF1 ( BSF-3,BSF3,CISS2,CLC,NNT-1,NNT1,NR6 )
Gene Full Name:	cardiotrophin-like cytokine factor 1
Band:	11q13.2
Quick Links	Entrez ID:23529; OMIM: 607672; Uniprot ID:CLCF1_HUMAN; ENSEMBL ID: ENSG00000175505; HGNC ID: 17412
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:5 results

Location(AA)	Modification
29	N-linked (GlcNAc...) (Potential).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_013246
Location:chr11 66888216-66897781
strand:-

Upstream the gene:17 results
Downstream the gene:0 results
Inside the gene:8 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	66906675	66906963	288	9038
CTCF	CD4	SISSRdata	66906675	66906963	288	9038
CTCF	Jurkat	GSE12889	66906537	66907017	480	8996
Fos	K562	GSE19551	66903508	66904159	651	6052
NRSF	pAb	Jurkat	66903143	66903981	838	5781
RARA	MCF7	GSE15244	66898337	66898644	307	709
RARA	MCF7	GSE15244	66905208	66905833	625	7739
RARG	MCF7	GSE15244	66898337	66898644	307	709
TAFII	hES	GSE17917	66906539	66906963	424	8970
TFAP2C	MCF7	GSE21234	66898084	66898808	724	665
TFAP2C	MCF7	GSE21234	66902488	66904327	1839	5626
hScc1	Bcell	GSE12603	66898163	66898611	448	606
hScc1	Bcell	GSE12603	66906326	66907063	737	8913
hScc1	CdLS	GSE12603	66906232	66907280	1048	8975
hScc1	G2	GSE9613	66906326	66906916	590	8840
p130	Senescent	GSE19898	66898280	66898984	704	851
p130	shRbQuiescent	GSE19898	66897777	66898979	1202	597

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FOXA1	MCF7	GSE15244	66891593	66892115	522	0
NRSF	pAb	Jurkat	66895595	66896852	1257	0
NRSF	pAb	Jurkat	66897239	66897567	328	0
TAF	Hela	GSE8489	66892331	66893114	783	0
TFAP2C	MCF7	GSE21234	66889472	66889901	429	0
hScc1	Bcell	GSE12603	66896537	66896852	315	0
hScc1	Bcell	GSE12603	66897239	66897652	413	0
p130	Senescent	GSE19898	66891859	66892051	192	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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