AutismKB 2.0

Annotation Detail for PSD4


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Basic Information Top
Gene Symbol:PSD4 ( EFA6B,FLJ36237,FLJ37279,TIC )
Gene Full Name: pleckstrin and Sec7 domain containing 4
Band: 2q14.1
Quick LinksEntrez ID:23550; OMIM: NA; Uniprot ID:PSD4_HUMAN; ENSEMBL ID: ENSG00000125637; HGNC ID: 19096
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
129Phosphothreonine.
131Phosphoserine.
143Phosphoserine.
491Phosphoserine.
1019Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
59O-linkedHMM predict
94Phosphothreonine(PKA)HMM predict
118Phosphoserine(CAMK2)HMM predict
131Phosphoserine(ATM)HMM predict
131Phosphoserine(CDC2)HMM predict
131Phosphoserine(MAPK)HMM predict
134Phosphoserine(CDC2)HMM predict
134Phosphoserine(IKK)HMM predict
143Phosphoserine(CDC2)HMM predict
147N-linkedHMM predict
204Phosphoserine(ATM)HMM predict
211Phosphoserine(CK1)HMM predict
216Phosphoserine(ATM)HMM predict
234Phosphoserine(ATM)HMM predict
435S-palmitoylHMM predict
442Phosphoserine(IKK)HMM predict
443Phosphoserine(CDC2)HMM predict
443Phosphoserine(ATM)HMM predict
443Phosphoserine(CDK)HMM predict
447Phosphoserine(CK1)HMM predict
448Phosphoserine(MAPK)HMM predict
448Phosphoserine(CDC2)HMM predict
461Phosphoserine(CDC2)HMM predict
461O-linkedHMM predict
464O-linkedHMM predict
465Phosphoserine(CK1)HMM predict
465Phosphoserine(ATM)HMM predict
469Phosphoserine(IKK)HMM predict
488Phosphoserine(ATM)HMM predict
491Phosphoserine(IKK)HMM predict
551N-linkedHMM predict
558Phosphoserine(CDC2)HMM predict
558O-linkedHMM predict
565Phosphoserine(IKK)HMM predict
604Phosphoserine(PKA)HMM predict
649Phosphoserine(CK1)HMM predict
796Phosphothreonine(CDC2)HMM predict
845O-linkedHMM predict
921Phosphoserine(CK2)HMM predict
922Phosphoserine(IKK)HMM predict
967Phosphotyrosine(Syk)HMM predict
1019Phosphoserine(CK1)HMM predict
1019Phosphoserine(IKK)HMM predict
1022Phosphoserine(CK1)HMM predict
1030Phosphothreonine(PKC)HMM predict
1037N-linkedHMM predict
1043Phosphothreonine(PKC)HMM predict
1044Phosphotyrosine(EGFR)HMM predict
1052AsparagineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_012455
  • Location:chr2 113648030-113677146
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 113631648 113632096 448 16159
CTCF G2GSE9613 113641361 113641733 372 6484
CTCF G2GSE9613 113642420 113642783 363 5429
FOXA1 MCF7GSE15244 113632201 113633763 1562 15049
Myc K562GSE19551 113641352 113641790 438 6460
TFAP2C MCF7GSE21234 113630966 113631342 376 16877
TFAP2C MCF7GSE21234 113633140 113633732 592 14595
USF1 HepG2E 113638213 113640068 1855 8890
USF1 HepG2E 113641104 113642457 1353 6250
p63 keratinocytesGSE17611 113638423 113639279 856 9180
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 113677949 113678274 325 965
CTCF CD4SISSRdata 113677949 113678274 325 965
CTCF G2GSE9613 113677908 113678503 595 1059
TFAP2C MCF7GSE21234 113677853 113678312 459 936
VDR GM10861-stimGSE22484 113675409 113681295 5886 1206
hScc1 BcellGSE12603 113677908 113678445 537 1030
hScc1 CdLSGSE12603 113677908 113678333 425 974
hScc1 G2GSE9613 113677908 113678578 670 1097
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 113647826 113648325 499 0
CTCF G2GSE9613 113652273 113652390 117 0
CTCF G2GSE9613 113656826 113657493 667 0
CTCF G2GSE9613 113665897 113667340 1443 0
CTCF G2GSE9613 113670958 113671138 180 0
CTCF G2GSE9613 113672802 113673438 636 0
CTCF G2GSE9613 113674182 113675332 1150 0
CTCF G2GSE9613 113676534 113676720 186 0
ER MCF7GSE19013 113649892 113651378 1486 0
Myc hESGSE17917 113673174 113673562 388 0
P300 T0-glioblastomaGSE21026 113673234 113673770 536 0
PHF8 HeLaGSE20725 113672614 113673791 1177 0
Pol2 GM12878GSE19551 113648886 113649792 906 0
SRF GMOGSE8489 113658800 113659012 212 0
Stat6 IL-4-hr4GSE17850 113659923 113660456 533 0
TFAP2C MCF7GSE21234 113659056 113660168 1112 0
VDR GM10861-stimGSE22484 113647296 113650981 3685 0
hScc1 BcellGSE12603 113672646 113673625 979 0
hScc1 BcellGSE12603 113676580 113676720 140 0
hScc1 CdLSGSE12603 113672914 113673625 711 0
hScc1 G2GSE9613 113672914 113673518 604 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 21292542
hsa-let-7a hsa-let-7a-2 11 21292542
hsa-let-7a hsa-let-7a-3 22 21292542
hsa-let-7a* hsa-let-7a-1 9 21292542
hsa-let-7a* hsa-let-7a-3 22 21292542
hsa-let-7b hsa-let-7b 22 21292542
hsa-let-7b* hsa-let-7b 22 21292542
hsa-let-7c hsa-let-7c 21 21292542
hsa-let-7c* hsa-let-7c 21 21292542
hsa-let-7d hsa-let-7d 9 21292542
hsa-let-7d* hsa-let-7d 9 21292542
hsa-let-7e hsa-let-7e 19 21292542
hsa-let-7e* hsa-let-7e 19 21292542
hsa-let-7f hsa-let-7f-1 9 21292542
hsa-let-7f hsa-let-7f-2 X 21292542
hsa-let-7f-1* hsa-let-7f-1 9 21292542
hsa-let-7f-2* hsa-let-7f-2 X 21292542
hsa-let-7g hsa-let-7g 3 21292542
hsa-let-7g* hsa-let-7g 3 21292542
hsa-let-7i hsa-let-7i 12 21292542
hsa-let-7i* hsa-let-7i 12 21292542
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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