Annotation Detail for TSPAN12

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Basic Information Top

Gene Symbol:	TSPAN12 ( EVR5,NET-2,NET2,TM4SF12 )
Gene Full Name:	tetraspanin 12
Band:	7q31.31
Quick Links	Entrez ID:23554; OMIM: 613138; Uniprot ID:TSN12_HUMAN; ENSEMBL ID: ENSG00000106025; HGNC ID: 21641
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:1 results

No data

Location(AA)	Modification	Resource
12	S-palmitoyl	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_012338
Location:chr7 120214611-120285412
strand:-

Upstream the gene:1 results
Downstream the gene:2 results
Inside the gene:19 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Nanog	hES	GSE18292	120300783	120301210	427	15584

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Nanog	ES	GSE20650	120201761	120202201	440	12631
Oct1	Hela	GSE14283	120201916	120201986	70	12661

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	120219396	120219643	247	0
CTCF	CD4	GSE12889	120233272	120233553	281	0
CTCF	CD4	SISSRdata	120219396	120219643	247	0
CTCF	CD4	SISSRdata	120233272	120233553	281	0
CTCF	Jurkat	GSE12889	120219413	120219593	180	0
CTCF	G2	GSE9613	120233157	120233539	382	0
CTCF	G2	GSE9613	120283892	120285429	1537	0
ER	Fulvestrant-MCF7	GSE14664	120276852	120276888	36	0
H3K4me3	colorectal	cancer	120283747	120284460	713	0
Myc	K562	GSE19551	120233187	120233570	383	0
NFkBII	GM12878	GSE19485	120264467	120266968	2501	0
Oct1	Hela	GSE14283	120221618	120221669	51	0
Oct1	Hela	GSE14283	120223437	120223468	31	0
Oct1	Hela	GSE14283	120276852	120276881	29	0
TAFII	hES	GSE17917	120233213	120233447	234	0
hScc1	Bcell	GSE12603	120233157	120233759	602	0
hScc1	Bcell	GSE12603	120284007	120285429	1422	0
hScc1	CdLS	GSE12603	120233157	120233722	565	0
hScc1	CdLS	GSE12603	120284136	120285406	1270	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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