AutismKB 2.0

Annotation Detail for OPN3


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Basic Information Top
Gene Symbol:OPN3 ( ECPN )
Gene Full Name: opsin 3
Band: 1q43
Quick LinksEntrez ID:23596; OMIM: 606695; Uniprot ID:OPN3_HUMAN; ENSEMBL ID: ENSG00000054277; HGNC ID: 14007
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
5N-linked (GlcNAc...) (Potential).
198N-linked (GlcNAc...) (Potential).
299N6-(retinylidene)lysine.
Location(AA) Modifications Resource
5N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
198N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
325S-palmitoyl cysteine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
12Phosphotyrosine(INSR)HMM predict
31Phosphoserine(CDK)HMM predict
31Phosphoserine(MAPK)HMM predict
31Phosphoserine(CDC2)HMM predict
41Phosphotyrosine(INSR)HMM predict
41Phosphotyrosine(SRC)HMM predict
74Phosphothreonine(MAPK)HMM predict
74Phosphothreonine(CDK)HMM predict
198N-linkedHMM predict
210S-palmitoylHMM predict
287Phosphothreonine(MAPK)HMM predict
367N-linkedHMM predict
382Phosphoserine(CK2)HMM predict
382Phosphoserine(ATM)HMM predict
382Phosphoserine(CK1)HMM predict
390N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014322
  • Location:chr1 239823075-239870323
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 239870442 239870782 340 289
H3ac HepG2E 239870925 239871513 588 896
SRF HelaGSE8489 239871189 239871878 689 1210
TFAP2C MCF7GSE21234 239870400 239870899 499 326
hScc1 G2GSE9613 239870442 239870998 556 397
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 239840839 239841287 448 0
CTCF CD4GSE12889 239857518 239857698 180 0
CTCF CD4SISSRdata 239840839 239841287 448 0
CTCF CD4SISSRdata 239857518 239857698 180 0
CTCF G2GSE9613 239832022 239832354 332 0
CTCF G2GSE9613 239835009 239835606 597 0
CTCF G2GSE9613 239840907 239841374 467 0
CTCF G2GSE9613 239853798 239854138 340 0
CTCF G2GSE9613 239857325 239857661 336 0
CTCF G2GSE9613 239869560 239870058 498 0
Fos K562GSE19551 239826447 239826887 440 0
H3K4me3 colorectalcancer 239868261 239869373 1112 0
H3ac HepG2E 239868926 239869373 447 0
PHF8 293TGSE20725 239869284 239870956 1672 0
Pol2 GM12878GSE19551 239869767 239870672 905 0
RARA MCF7GSE15244 239841055 239842025 970 0
TAF k562GSE8489 239867777 239869373 1596 0
VDR GM10855-stimGSE22484 239840382 239841999 1617 0
hScc1 BcellGSE12603 239840907 239841342 435 0
hScc1 BcellGSE12603 239857325 239857780 455 0
hScc1 CdLSGSE12603 239840907 239841440 533 0
hScc1 CdLSGSE12603 239857218 239857960 742 0
hScc1 G2GSE9613 239840723 239841440 717 0
p130 SenescentGSE19898 239842662 239842958 296 0
p63 keratinocytesGSE17611 239838212 239839170 958 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
2589 mRNA KMO chr1 238021747 238084984 1079 mRNA OPN3 chr1 238082955 238129652Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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