AutismKB 2.0

Annotation Detail for ZMYND8


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Basic Information Top
Gene Symbol:ZMYND8 ( MGC31836,PRKCBP1,PRO2893,RACK7 )
Gene Full Name: zinc finger, MYND-type containing 8
Band: 20q13.12
Quick LinksEntrez ID:23613; OMIM: NA; Uniprot ID:PKCB1_HUMAN; ENSEMBL ID: ENSG00000101040; HGNC ID: 9397
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
406Phosphoserine.
413N6-acetyllysine.
460Phosphoserine.
462Phosphoserine.
465Phosphoserine.
486Phosphoserine.
488Phosphoserine.
490Phosphoserine.
495Phosphoserine.
541Phosphothreonine.
547Phosphoserine.
652Phosphoserine.
655Phosphoserine.
668Phosphoserine.
756Phosphoserine.
760Phosphothreonine.
1086Phosphoserine.
1089Phosphoserine.
1093Phosphothreonine.
Location(AA) Modifications Resource
486Phosphoserine.Swiss-Prot 53.0
486PhosphoserinePhospho.ELM 6.0
490Phosphoserine.Swiss-Prot 53.0
490PhosphoserinePhospho.ELM 6.0
547Phosphoserine.Swiss-Prot 53.0
547PhosphoserinePhospho.ELM 6.0
652Phosphoserine.Swiss-Prot 53.0
652PhosphoserinePhospho.ELM 6.0
668Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
24Phosphoserine(CDC2)HMM predict
37O-linkedHMM predict
40Phosphoserine(CDC2)HMM predict
40Phosphoserine(CDK)HMM predict
103S-palmitoylHMM predict
106S-palmitoylHMM predict
185SulfotyrosineHMM predict
207Phosphotyrosine(EGFR)HMM predict
258S-palmitoylHMM predict
361N-linkedHMM predict
370Phosphothreonine(MAPK)HMM predict
370Phosphothreonine(CDK)HMM predict
425Phosphoserine(PKA)HMM predict
425Phosphoserine(PKG)HMM predict
425Phosphoserine(CAMK2)HMM predict
425Phosphoserine(PKB)HMM predict
435Phosphoserine(IKK)HMM predict
437N-linkedHMM predict
462Phosphoserine(CK2)HMM predict
472Phosphoserine(IKK)HMM predict
475Phosphoserine(CDC2)HMM predict
475Phosphoserine(IKK)HMM predict
478O-linkedHMM predict
486Phosphoserine(IKK)HMM predict
488Phosphoserine(ATM)HMM predict
490Phosphoserine(CDC2)HMM predict
490Phosphoserine(ATM)HMM predict
495Phosphoserine(CDC2)HMM predict
506O-linkedHMM predict
510Phosphoserine(IKK)HMM predict
533Phosphoserine(CK1)HMM predict
535Phosphoserine(CK1)HMM predict
547Phosphoserine(CDC2)HMM predict
547Phosphoserine(MAPK)HMM predict
581Phosphotyrosine(SRC)HMM predict
581Phosphotyrosine(Jak)HMM predict
581Phosphotyrosine(Syk)HMM predict
581PhosphotyrosineHMM predict
587Phosphoserine(CK1)HMM predict
587Phosphoserine(CK2)HMM predict
592Phosphoserine(CK1)HMM predict
592Phosphoserine(CK2)HMM predict
595Phosphoserine(CK1)HMM predict
595Phosphoserine(CK2)HMM predict
597Phosphoserine(CK2)HMM predict
598Phosphoserine(CK1)HMM predict
598Phosphoserine(CK2)HMM predict
600Phosphoserine(CK1)HMM predict
602Phosphotyrosine(INSR)HMM predict
602SulfotyrosineHMM predict
604Phosphoserine(CK2)HMM predict
604Phosphoserine(CK2)HMM predict
617Phosphothreonine(CK2)HMM predict
639O-linkedHMM predict
652Phosphoserine(CDC2)HMM predict
652Phosphoserine(MAPK)HMM predict
652Phosphoserine(CDK)HMM predict
655Phosphoserine(CK2)HMM predict
707Phosphoserine(CK2)HMM predict
709Phosphoserine(CK1)HMM predict
711Phosphoserine(CK1)HMM predict
746Phosphothreonine(MAPK)HMM predict
746Phosphothreonine(CDK)HMM predict
746PhosphothreonineHMM predict
749O-linkedHMM predict
750O-linkedHMM predict
754O-linkedHMM predict
756Phosphoserine(IKK)HMM predict
760Phosphothreonine(CDK)HMM predict
766O-linkedHMM predict
767O-linkedHMM predict
770O-linkedHMM predict
771O-linkedHMM predict
776O-linkedHMM predict
778O-linkedHMM predict
779O-linkedHMM predict
780O-linkedHMM predict
780O-linkedHMM predict
780O-linkedHMM predict
780Phosphoserine(IKK)HMM predict
781O-linkedHMM predict
782O-linkedHMM predict
782O-linkedHMM predict
783O-linkedHMM predict
783O-linkedHMM predict
786O-linkedHMM predict
788O-linkedHMM predict
795O-linkedHMM predict
797Phosphoserine(CDC2)HMM predict
797Phosphoserine(CDK)HMM predict
820N-linkedHMM predict
829Phosphoserine(ATM)HMM predict
856Phosphoserine(ATM)HMM predict
863Phosphothreonine(PKC)HMM predict
878Phosphoserine(CDC2)HMM predict
878Phosphoserine(IKK)HMM predict
880O-linkedHMM predict
882O-linkedHMM predict
883O-linkedHMM predict
885O-linkedHMM predict
888O-linkedHMM predict
889O-linkedHMM predict
892O-linkedHMM predict
893Phosphoserine(CDC2)HMM predict
897O-linkedHMM predict
899O-linkedHMM predict
951N-linkedHMM predict
995Phosphoserine(PKG)HMM predict
1042N-linkedHMM predict
1048SulfotyrosineHMM predict
1083N-linkedHMM predict
1086Phosphoserine(ATM)HMM predict
1089O-linkedHMM predict
1089Phosphoserine(IKK)HMM predict
1091Phosphoserine(CK1)HMM predict
1093O-linkedHMM predict
1095O-linkedHMM predict
1098O-linkedHMM predict
1098Phosphoserine(CK1)HMM predict
1098Phosphoserine(CK2)HMM predict
1100O-linkedHMM predict
1100O-linkedHMM predict
1109Phosphothreonine(CK2)HMM predict
1147N-linkedHMM predict
1150Phosphoserine(IKK)HMM predict
1169O-linkedHMM predict
1171O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_012408
  • Location:chr20 45271787-45418880
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 45418315 45421975 3660 1265
FOXA1 MCF7GSE15244 45422559 45423713 1154 4256
FOXA1 eGFPGSE10845 45418315 45421975 3660 1265
FOXA1 eGFPGSE10845 45422559 45423713 1154 4256
Gata1 K562GSE18868 45422591 45423243 652 4037
Gata2 K562GSE18868 45422547 45423717 1170 4252
Gata2 K562GSE18868 45427111 45427929 818 8640
H3K4me2 HCT116GSE10453 45421517 45421975 458 2866
H3ac HepG2E 45422559 45423928 1369 4363
H3ac HepG2E 45433008 45433701 693 14474
H3ac HepG2E 45434072 45434403 331 15357
RARA MCF7GSE15244 45422559 45423901 1342 4350
TAF HelaGSE8489 45421377 45421975 598 2796
TAF HelaGSE8489 45422559 45423713 1154 4256
hScc1 BcellGSE12603 45419295 45419621 326 578
hScc1 BcellGSE12603 45433282 45433701 419 14611
p130 QuiescentGSE19898 45419763 45420352 589 1177
p130 SenescentGSE19898 45419499 45420263 764 1001
p130 SenescentGSE19898 45420635 45421349 714 2112
p130 shRbQuiescentGSE19898 45419411 45420324 913 987
p130 shRbQuiescentGSE19898 45420850 45421439 589 2264
p130 shRbQuiescentGSE19898 45422370 45423218 848 3914
p130 shRbSenescentGSE19898 45419743 45420208 465 1095
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 45267816 45267974 158 3893
CTCF CD4SISSRdata 45267816 45267974 158 3893
CTCF G2GSE9613 45267608 45268161 553 3903
FOXA1 MCF7GSE15244 45267547 45268161 614 3934
FOXA1 eGFPGSE10845 45267547 45268161 614 3934
RARA MCF7GSE15244 45267547 45268161 614 3934
USF1 HepG2E 45267547 45268161 614 3934
USF2 HepG2E 45267547 45268161 614 3934
hScc1 BcellGSE12603 45267750 45268161 411 3832
hScc1 BcellGSE12603 45270772 45271055 283 874
hScc1 G2GSE9613 45267547 45268161 614 3934
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 45335856 45337487 1631 0
CTCF CD4GSE12889 45282172 45282435 263 0
CTCF CD4GSE12889 45335028 45335250 222 0
CTCF CD4SISSRdata 45282172 45282435 263 0
CTCF CD4SISSRdata 45335028 45335250 222 0
CTCF G2GSE9613 45281860 45282435 575 0
CTCF G2GSE9613 45334896 45335253 357 0
ER MCF7GSE19013 45407010 45408264 1254 0
FOXA1 MCF7GSE15244 45366058 45367086 1028 0
FOXA1 MCF7GSE15244 45380221 45382561 2340 0
FOXA1 MCF7GSE15244 45382905 45383897 992 0
FOXA1 MCF7GSE15244 45388801 45389240 439 0
FOXA1 MCF7GSE15244 45390253 45390554 301 0
FOXA1 eGFPGSE10845 45366058 45367086 1028 0
FOXA1 eGFPGSE10845 45380221 45382561 2340 0
FOXA1 eGFPGSE10845 45382905 45383897 992 0
FOXA1 eGFPGSE10845 45388801 45389240 439 0
FOXA1 eGFPGSE10845 45390253 45390554 301 0
Fos K562GSE19551 45336575 45337116 541 0
Fos K562GSE19551 45393121 45394001 880 0
Fos K562GSE19551 45418492 45419167 675 0
H3K4me2 HCT116GSE10453 45416562 45418279 1717 0
H3ac HepG2E 45379566 45379869 303 0
H3ac HepG2E 45380221 45382542 2321 0
H3ac HepG2E 45382905 45383861 956 0
H3ac HepG2E 45400698 45401090 392 0
H3ac HepG2E 45410489 45421975 11486 0
Myc K562GSE19551 45316092 45316448 356 0
Nanog hESGSE18292 45392003 45392294 291 0
Oct4 hESGSE21916 45381533 45382357 824 0
P300 T30-glioblastomaGSE21026 45336023 45337463 1440 0
RARA MCF7GSE15244 45345290 45345936 646 0
RARA MCF7GSE15244 45365947 45367086 1139 0
RARA MCF7GSE15244 45376809 45378159 1350 0
RARA MCF7GSE15244 45380221 45382561 2340 0
RARA MCF7GSE15244 45382905 45383897 992 0
RARA MCF7GSE15244 45388552 45389240 688 0
RARA MCF7GSE15244 45390253 45390554 301 0
RARA MCF7GSE15244 45390917 45391360 443 0
RARA MCF7GSE15244 45391928 45394048 2120 0
RARA MCF7GSE15244 45412792 45415304 2512 0
RARA MCF7GSE15244 45415714 45421975 6261 0
Rb GrowingGSE19898 45294012 45294177 165 0
Rb QuiescentGSE19898 45303514 45303722 208 0
Rb shRbSenescenceGSE19898 45398818 45399041 223 0
STAT1 HeLaGSE12783 45334724 45337327 2603 0
Sox2 hESGSE18292 45334887 45335320 433 0
Sox2 hESGSE18292 45381374 45382027 653 0
Stat6 IL-4-hr4GSE17850 45393434 45394013 579 0
TAF HelaGSE8489 45416814 45418205 1391 0
TAF k562GSE8489 45416231 45418746 2515 0
USF1 HepG2E 45418097 45419076 979 0
USF2 HepG2E 45418025 45418943 918 0
hScc1 BcellGSE12603 45289128 45289375 247 0
hScc1 BcellGSE12603 45324844 45325157 313 0
hScc1 CdLSGSE12603 45320807 45321379 572 0
hScc1 CdLSGSE12603 45334535 45335253 718 0
hScc1 G2GSE9613 45334649 45335253 604 0
hScc1 G2GSE9613 45359130 45359386 256 0
p130 SenescentGSE19898 45383537 45383717 180 0
p130 shRbQuiescentGSE19898 45380269 45382344 2075 0
p63 keratinocytesGSE17611 45368818 45369404 586 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
16466 mRNA chr20 45380652 45382874 111 HTC PRKCBP1 chr20 45299466 45381212Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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