AutismKB 2.0

Annotation Detail for RAB38


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Basic Information Top
Gene Symbol:RAB38 ( NY-MEL-1,rrGTPbp )
Gene Full Name: RAB38, member RAS oncogene family
Band: 11q14.2
Quick LinksEntrez ID:23682; OMIM: 606281; Uniprot ID:RAB38_HUMAN; ENSEMBL ID: ENSG00000123892; HGNC ID: 9776
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
46Effector region (By similarity).
Location(AA) Modifications Resource
205S-palmitoyl cysteine (Potential).Swiss-Prot 53.0
208S-farnesyl cysteine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
33N-linkedHMM predict
74N-linkedHMM predict
204O-linkedHMM predict
210LysineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_022337
  • Location:chr11 87486078-87548246
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 87553220 87553255 35 4991
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 87476498 87476798 300 9431
CTCF CD4SISSRdata 87476498 87476798 300 9431
ER E2-MCF7GSE14664 87478865 87478936 71 7178
ER Fulvestrant-MCF7GSE14664 87480932 87481029 97 5098
Myc K562GSE19551 87476555 87476765 210 9419
Oct1 HelaGSE14283 87469873 87469947 74 16169
hScc1 BcellGSE12603 87476682 87476842 160 9317
hScc1 CdLSGSE12603 87476682 87476842 160 9317
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 87506403 87506435 32 0
ER Fulvestrant-MCF7GSE14664 87525727 87525813 86 0
Oct1 H2O2-HelaGSE14283 87486304 87486336 32 0
Oct1 H2O2-HelaGSE14283 87507071 87507100 29 0
Oct1 H2O2-HelaGSE14283 87523028 87523073 45 0
Oct1 H2O2-HelaGSE14283 87536437 87536464 27 0
Oct1 H2O2-HelaGSE14283 87536869 87536896 27 0
Oct1 HelaGSE14283 87486306 87486338 32 0
Oct1 HelaGSE14283 87507070 87507104 34 0
Oct1 HelaGSE14283 87523026 87523075 49 0
Oct1 HelaGSE14283 87533660 87533692 32 0
Oct1 HelaGSE14283 87536437 87536508 71 0
Oct1 HelaGSE14283 87536861 87536896 35 0
RNAII Tamoxifen-MCF7GSE14664 87486291 87486338 47 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
5000 EST chr11 87471406 87496154 10076 mRNA RAB38 chr11 87486078 87548247 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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