AutismKB 2.0

Annotation Detail for PRPF6


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Basic Information Top
Gene Symbol:PRPF6 ( ANT-1,C20orf14,Prp6,TOM,U5-102K,hPrp6 )
Gene Full Name: PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)
Band: 20q13.33
Quick LinksEntrez ID:24148; OMIM: NA; Uniprot ID:PRP6_HUMAN; ENSEMBL ID: ENSG00000101161; HGNC ID: 15860
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
266Phosphothreonine.
275Phosphothreonine.
279Phosphoserine.
585N6-acetyllysine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
74N-linkedHMM predict
77N-linkedHMM predict
78Phosphotyrosine(EGFR)HMM predict
78Phosphotyrosine(INSR)HMM predict
94Phosphotyrosine(Syk)HMM predict
105Phosphotyrosine(Jak)HMM predict
176Phosphotyrosine(EGFR)HMM predict
196N-linkedHMM predict
205O-linkedHMM predict
256Phosphoserine(PKG)HMM predict
256Phosphoserine(ATM)HMM predict
261Phosphoserine(CK1)HMM predict
261Phosphoserine(IKK)HMM predict
658Phosphotyrosine(SRC)HMM predict
658Phosphotyrosine(Jak)HMM predict
658Phosphotyrosine(EGFR)HMM predict
658Phosphotyrosine(Syk)HMM predict
671Phosphoserine(PKG)HMM predict
828Phosphothreonine(PKA)HMM predict
830Phosphoserine(CAMK2)HMM predict
830Phosphoserine(IKK)HMM predict
903Phosphoserine(PKA)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_012469
  • Location:chr20 62082874-62134894
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 62082576 62082909 333 132
CTCF CD4SISSRdata 62082576 62082909 333 132
CTCF HelaGSE12889 62082630 62082878 248 121
CTCF G2GSE9613 62082531 62083216 685 1
ETS1 JurkatGSE17954 62082382 62083336 954 16
Myc K562GSE19551 62081715 62083257 1542 389
Myc hESGSE17917 62082727 62082996 269 13
hScc1 BcellGSE12603 62082531 62083193 662 13
p130 SenescentGSE19898 62082356 62082992 636 201
p130 shRbSenescentGSE19898 62082537 62083098 561 57
p63 keratinocytesGSE17611 62081754 62083259 1505 368
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
NFkBII GM12878GSE19485 62136486 62138141 1655 2419
NFkBII GM12892GSE19485 62136620 62137787 1167 2309
NRSF mAbJurkat 62135075 62135350 275 318
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 62127844 62127984 140 0
GABP k562GSE8489 62083549 62083937 388 0
GABP k562GSE8489 62084279 62085421 1142 0
H3ac HepG2E 62081938 62083937 1999 0
H3ac HepG2E 62084279 62085421 1142 0
H3ac HepG2E 62125127 62126394 1267 0
P300 T30-glioblastomaGSE21026 62082394 62083360 966 0
P300 T30-glioblastomaGSE21026 62103248 62103944 696 0
PHF8 Hs68minusFBSGSE20725 62082522 62083417 895 0
Rb GrowingGSE19898 62083232 62083432 200 0
Rb SenescentGSE19898 62082736 62083111 375 0
Rb shRbQuiescentGSE19898 62134540 62134761 221 0
TFAP2C MCF7GSE21234 62112384 62113121 737 0
USF2 HepG2E 62125842 62126425 583 0
hScc1 BcellGSE12603 62113881 62114701 820 0
hScc1 BcellGSE12603 62127513 62127813 300 0
hScc1 BcellGSE12603 62130969 62131220 251 0
p63 keratinocytesGSE17611 62109547 62110250 703 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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