AutismKB 2.0

Annotation Detail for RALGAPA1


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Basic Information Top
Gene Symbol:RALGAPA1 ( DKFZp566D133,DKFZp667F074,GARNL1,GRIPE,KIAA0884,TULIP1 )
Gene Full Name: Ral GTPase activating protein, alpha subunit 1 (catalytic)
Band: 14q13.2
Quick LinksEntrez ID:253959; OMIM: 608884; Uniprot ID:RGPA1_HUMAN; ENSEMBL ID: ENSG00000174373; HGNC ID: 17770
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
754Phosphothreonine.
773Phosphoserine.
778Phosphothreonine.
797Phosphoserine.
860Phosphoserine.
861Phosphoserine.
864Phosphoserine.
1000Phosphoserine (By similarity).
1002Phosphothreonine (By similarity).
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_194301
  • Location:chr14 35077309-35348182
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 35348090 35348560 470 143
Myc K562GSE19551 35348052 35348450 398 69
Oct4 hESGSE17917 35348157 35348516 359 154
Rb SenescentGSE19898 35348087 35348402 315 62
p130 QuiescentGSE19898 35348133 35348318 185 43
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
NRSF mAbJurkat 35077043 35077414 371 81
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 35226391 35226561 170 0
CTCF CD4SISSRdata 35226391 35226561 170 0
CTCF G2GSE9613 35347672 35348234 562 0
FOXA1 MCF7GSE15244 35208670 35209113 443 0
Fos K562GSE19551 35226320 35226602 282 0
FoxA1 MCF7MACSdata 35208892 35209151 259 0
H3K4me3 colorectalcancer 35346220 35347341 1121 0
H3ac HepG2E 35346919 35347779 860 0
Nanog ESGSE20650 35097559 35097961 402 0
Oct1 H2O2-HelaGSE14283 35248319 35248352 33 0
Oct1 HelaGSE14283 35248319 35248367 48 0
Oct4 hESGSE17917 35156514 35156659 145 0
PHF8 Hs68plusFBSGSE20725 35347600 35348719 1119 0
RARA MCF7GSE15244 35208670 35209040 370 0
RARG MCF7GSE15244 35146897 35147061 164 0
RARG MCF7GSE15244 35208670 35209006 336 0
RARG MCF7GSE15244 35223590 35224054 464 0
RNAII Tamoxifen-MCF7GSE14664 35251479 35251514 35 0
hScc1 BcellGSE12603 35226283 35226562 279 0
hScc1 BcellGSE12603 35347922 35348269 347 0
hScc1 CdLSGSE12603 35225929 35226855 926 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
7797 mRNA chr14 35264829 35265433 604 mRNA GARNL1 chr14 35077309 35348183 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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