Annotation Detail for BAMBI

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Basic Information Top

Gene Symbol:	BAMBI ( NMA )
Gene Full Name:	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)
Band:	10p12.1
Quick Links	Entrez ID:25805; OMIM: 604444; Uniprot ID:BAMBI_HUMAN; ENSEMBL ID: ENSG00000095739; HGNC ID: 30251
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:3 results

Location(AA)	Modification
87	N-linked (GlcNAc...) (Potential).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_012342
Location:chr10 29006429-29011873
strand:+

Upstream the gene:13 results
Downstream the gene:3 results
Inside the gene:12 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	28992751	28993162	411	13473
CTCF	CD4	GSE12889	29006105	29006394	289	180
CTCF	CD4	SISSRdata	28992751	28993162	411	13473
CTCF	CD4	SISSRdata	29006105	29006394	289	180
CTCF	Hela	GSE12889	28992833	28993085	252	13471
CTCF	Jurkat	GSE12889	28992809	28993035	226	13508
ER	Breast-Cancer	GSE22609	28989194	28989616	422	17025
H3K27me3	colorectal	cancer	29000459	29000742	283	5829
H3K27me3	colorectal	cancer	29003977	29004539	562	2172
RARA	MCF7	GSE15244	28998652	28999252	600	7478
RARG	MCF7	GSE15244	28998690	28999113	423	7528
hScc1	Bcell	GSE12603	28992695	28993172	477	13496
hScc1	CdLS	GSE12603	28992588	28993172	584	13550

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FOXA1	MCF7	GSE15244	29013860	29014591	731	2352
FoxA1	MCF7	MACSdata	29014072	29014433	361	2379
RARG	MCF7	GSE15244	29014085	29014553	468	2446

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	MCF7	GSE19013	29010801	29011674	873	0
H3K4me3	colorectal	cancer	29008518	29008854	336	0
H3ac	HepG2	E	29007227	29008009	782	0
H3ac	HepG2	E	29008482	29009628	1146	0
PHF8	HeLa	GSE20725	29006216	29007095	879	0
RARG	MCF7	GSE15244	29007371	29007797	426	0
RARG	MCF7	GSE15244	29011023	29011282	259	0
TAF	k562	GSE8489	29007115	29009042	1927	0
TFAP2C	MCF7	GSE21234	29007195	29007419	224	0
hScc1	Bcell	GSE12603	29005802	29007187	1385	0
hScc1	CdLS	GSE12603	29006104	29007151	1047	0
hScc1	G2	GSE9613	29005802	29007335	1533	0

Validated miRNA targets

miR Walk:8 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-181b	hsa-mir-181b-1	1	21042576
hsa-miR-181b	hsa-mir-181b-2	9	21042576
hsa-miR-20b	hsa-mir-20b	X	21042576
hsa-miR-20b*	hsa-mir-20b	X	21042576
hsa-miR-31	hsa-mir-31	9	20522784
hsa-miR-31*	hsa-mir-31	9	20522784
hsa-miR-34a	hsa-mir-34a	1	21042576
hsa-miR-34a*	hsa-mir-34a	1	21042576

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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