Annotation Detail for THUMPD3

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Basic Information Top

Gene Symbol:	THUMPD3 ( DKFZp434F091 )
Gene Full Name:	THUMP domain containing 3
Band:	3p25.3
Quick Links	Entrez ID:25917; OMIM: NA; Uniprot ID:THUM3_HUMAN; ENSEMBL ID: ENSG00000134077; HGNC ID: 24493
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

No data

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	9369826	9370167	341	9739
CTCF	CD4	SISSRdata	9369826	9370167	341	9739
CTCF	G2	GSE9613	9369596	9370033	437	9921
FOXA1	MCF7	GSE15244	9365219	9366092	873	14080
FOXA1	MCF7	GSE15244	9369596	9370299	703	9788
FOXA1	MCF7	GSE15244	9371391	9371905	514	8088
FoxA1	MCF7	MACSdata	9370176	9370445	269	9425
PHF8	HeLa	GSE20725	9379044	9380294	1250	67
RARA	MCF7	GSE15244	9365219	9366614	1395	13819
RARA	MCF7	GSE15244	9369596	9370333	737	9771
RARA	MCF7	GSE15244	9371391	9371875	484	8103
RARG	MCF7	GSE15244	9365183	9366472	1289	13908
RARG	MCF7	GSE15244	9369596	9370263	667	9806
Rb	shRbSenescence	GSE19898	9369679	9369934	255	9929
TFAP2C	MCF7	GSE21234	9365878	9366412	534	13591
hScc1	Bcell	GSE12603	9369888	9370223	335	9680
hScc1	CdLS	GSE12603	9369888	9370299	411	9642

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	9421535	9421688	153	19200
CTCF	CD4	SISSRdata	9421535	9421688	153	19200
CTCF	G2	GSE9613	9413218	9415142	1924	11769
ETS1	Jurkat	GSE17954	9412621	9415022	2401	11410
FOXA1	MCF7	GSE15244	9412196	9412967	771	10170
FOXA1	MCF7	GSE15244	9414818	9415884	1066	12940
FOXA1	MCF7	GSE15244	9419435	9419676	241	17144
H3ac	HepG2	E	9411330	9413169	1839	9838
H3ac	HepG2	E	9414612	9416877	2265	13333
H3ac	HepG2	E	9418683	9419399	716	16630
Oct1	H2O2-Hela	GSE14283	9404073	9404119	46	1685
Oct1	Hela	GSE14283	9404073	9404120	47	1685
PHF8	HeLa	GSE20725	9412750	9415423	2673	11675
PHF8	Hs68plusFBS	GSE20725	9412617	9416083	3466	11939
Pol2	GM12878	GSE19551	9412730	9415846	3116	11877
RARA	MCF7	GSE15244	9411330	9412896	1566	9702
RARA	MCF7	GSE15244	9415223	9416743	1520	13572
RARG	MCF7	GSE15244	9412260	9412896	636	10167
RARG	MCF7	GSE15244	9415178	9415743	565	13049
TAF	Hela	GSE8489	9415223	9416562	1339	13481
TAF	k562	GSE8489	9414950	9417355	2405	13741
TFAP2C	MCF7	GSE21234	9412529	9414227	1698	10967
VDR	GM10861-stim	GSE22484	9409022	9416192	7170	10196
hScc1	Bcell	GSE12603	9413218	9414852	1634	11624
hScc1	CdLS	GSE12603	9412835	9415016	2181	11514
hScc1	G2	GSE9613	9414391	9415142	751	12355
p130	Quiescent	GSE19898	9413451	9414225	774	11427
p130	Quiescent	GSE19898	9415478	9415695	217	13175
p130	Senescent	GSE19898	9413412	9414335	923	11462
p130	Senescent	GSE19898	9414765	9415844	1079	12893
p130	shRbQuiescent	GSE19898	9412762	9414223	1461	11081
p130	shRbQuiescent	GSE19898	9414637	9415198	561	12506
p130	shRbSenescent	GSE19898	9412681	9414327	1646	11093

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
ETS1	Jurkat	GSE17954	9379285	9380279	994
H3ac	HepG2	E	9380198	9380447	249
PolII	HeLa	GSE12783	9379035	9380864	1829
RARA	MCF7	GSE15244	9379563	9379945	382
RARG	MCF7	GSE15244	9379563	9379945	382
Rb	Growing	GSE19898	9379825	9380244	419
Rb	Quiescent	GSE19898	9379555	9380208	653
Rb	Senescent	GSE19898	9379629	9380342	713
Rb	shRbQuiescent	GSE19898	9379853	9380157	304
Rb	shRbSenescence	GSE19898	9379842	9380130	288
p130	Quiescent	GSE19898	9379325	9380216	891
p130	Senescent	GSE19898	9379412	9380301	889
p130	shRbQuiescent	GSE19898	9379335	9380418	1083
p130	shRbSenescent	GSE19898	9379445	9380438	993

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
17744	mRNA	THUMPD3	chr3	9379735	9402412	131	EST		chr3	9402281	9407024	Sense/Antisense (SA) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018