AutismKB 2.0

Annotation Detail for GAP43


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Basic Information Top
Gene Symbol:GAP43 ( B-50,PP46 )
Gene Full Name: growth associated protein 43
Band: 3q13.31
Quick LinksEntrez ID:2596; OMIM: 162060; Uniprot ID:NEUM_HUMAN; ENSEMBL ID: ENSG00000172020; HGNC ID: 4140
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
41Phosphoserine (By similarity).
94Phosphothreonine (By similarity).
181Phosphothreonine (By similarity).
202Phosphoserine; by CK2 (By similarity).
203Phosphoserine; by CK2 (By similarity).
Location(AA) Modifications Resource
3S-palmitoyl cysteine (By similarity).Swiss-Prot 53.0
4S-palmitoyl cysteine (By similarity).Swiss-Prot 53.0
41Phosphoserine (By similarity).Swiss-Prot 53.0
94Phosphothreonine (By similarity).Swiss-Prot 53.0
181Phosphothreonine (By similarity).Swiss-Prot 53.0
202Phosphoserine (by CK2) (By similarity).Swiss-Prot 53.0
203Phosphoserine (by CK2) (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
41Phosphoserine(PKC)HMM predict
86Phosphothreonine(CK2)HMM predict
87O-linkedHMM predict
107Phosphothreonine(CDK)HMM predict
107Phosphothreonine(MAPK)HMM predict
130PhosphoserineHMM predict
142O-linkedHMM predict
151Phosphoserine(CDC2)HMM predict
151Phosphoserine(IKK)HMM predict
151Phosphoserine(CDK)HMM predict
153Phosphoserine(CK2)HMM predict
175O-linkedHMM predict
181O-linkedHMM predict
181Phosphothreonine(MAPK)HMM predict
192O-linkedHMM predict
202Phosphoserine(CK2)HMM predict
203Phosphoserine(ATM)HMM predict
203Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002045
  • Location:chr3 116825141-116922841
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
p130 SenescentGSE19898 116824982 116825226 244 38
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 116894493 116894784 291 0
CTCF CD4SISSRdata 116894493 116894784 291 0
CTCF G2GSE9613 116891375 116891650 275 0
CTCF G2GSE9613 116894459 116895559 1100 0
ER Fulvestrant-MCF7GSE14664 116869141 116869173 32 0
FOXA1 MCF7GSE15244 116906257 116906691 434 0
Myc K562GSE19551 116894426 116894704 278 0
Oct1 H2O2-HelaGSE14283 116854798 116854827 29 0
Oct1 H2O2-HelaGSE14283 116856876 116856904 28 0
Oct1 HelaGSE14283 116869132 116869180 48 0
hScc1 BcellGSE12603 116894387 116894918 531 0
hScc1 CdLSGSE12603 116894224 116894951 727 0
hScc1 G2GSE9613 116894117 116895337 1220 0
p130 QuiescentGSE19898 116859590 116860058 468 0
p130 QuiescentGSE19898 116860138 116860835 697 0
p130 SenescentGSE19898 116859415 116859999 584 0
p130 SenescentGSE19898 116860118 116860730 612 0
p130 SenescentGSE19898 116860749 116860930 181 0
p130 shRbQuiescentGSE19898 116859596 116860034 438 0
p130 shRbQuiescentGSE19898 116860233 116860641 408 0
p130 shRbSenescentGSE19898 116859574 116860062 488 0
p130 shRbSenescentGSE19898 116860150 116860730 580 0
p130 shRbSenescentGSE19898 116860851 116861081 230 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18521 mRNA GAP43 chr3 116825141 116922842 429 EST chr3 116894358 116894787 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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