Annotation Detail for TMEM87A
Basic Information Top
| Gene Symbol: | TMEM87A ( DKFZp564G2022 ) |
|---|---|
| Gene Full Name: | transmembrane protein 87A |
| Band: | 15q15.1 |
| Quick Links | Entrez ID:25963; OMIM: NA; Uniprot ID:TM87A_HUMAN; ENSEMBL ID: ENSG00000103978; HGNC ID: 24522 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 79 | N-linked (GlcNAc...) (Potential). | |
| 127 | N-linked (GlcNAc...) (Potential). | |
| 157 | N-linked (GlcNAc...). | |
| 160 | N-linked (GlcNAc...). | |
| 540 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 79 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 127 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 157 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 540 | Phosphoserine. | Swiss-Prot 53.0 |
| 549 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 28 | O-linked | HMM predict |
| 62 | N-linked | HMM predict |
| 79 | N-linked | HMM predict |
| 120 | Phosphothreonine(PKC) | HMM predict |
| 157 | N-linked | HMM predict |
| 160 | N-linked | HMM predict |
| 197 | Phosphoserine(CK1) | HMM predict |
| 201 | Phosphoserine(CK1) | HMM predict |
| 224 | Phosphotyrosine(INSR) | HMM predict |
| 306 | Phosphoserine(PKA) | HMM predict |
| 472 | Phosphoserine(CDC2) | HMM predict |
| 475 | Phosphoserine(CK2) | HMM predict |
| 475 | Phosphoserine(CK2) | HMM predict |
- RefSeq ID: NM_015497
- Location:chr15 40290025-40352922
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ETS1 | Jurkat | GSE17954 | 40352240 | 40353647 | 1407 | 21 |
| H3ac | HepG2 | E | 40351611 | 40354447 | 2836 | 107 |
| PHF8 | 293T | GSE20725 | 40352399 | 40353613 | 1214 | 84 |
| hScc1 | Bcell | GSE12603 | 40352469 | 40353724 | 1255 | 174 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 40352687 | 40353028 | 341 | 0 |
| FOXA1 | MCF7 | GSE15244 | 40350160 | 40350898 | 738 | 0 |
| FOXA1 | eGFP | GSE10845 | 40350160 | 40350898 | 738 | 0 |
| FoxA1 | MCF7 | MACSdata | 40350669 | 40350972 | 303 | 0 |
| H3K4me3 | colorectal | cancer | 40352109 | 40352983 | 874 | 0 |
| PHF8 | HeLa | GSE20725 | 40352332 | 40353457 | 1125 | 0 |
| PHF8 | Hs68minusFBS | GSE20725 | 40352257 | 40353339 | 1082 | 0 |
| RARA | MCF7 | GSE15244 | 40350160 | 40350898 | 738 | 0 |
| TAF | Hela | GSE8489 | 40351338 | 40354447 | 3109 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7b | hsa-let-7b | 22 | 18668040 |
| hsa-let-7b* | hsa-let-7b | 22 | 18668040 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 18668040 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 18668040 |
| hsa-miR-155 | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-155* | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 18668040 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 18668040 |
| hsa-miR-30a | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30a* | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30b | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30b* | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-1* | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-2* | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30d | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30d* | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30e | hsa-mir-30e | 1 | 18668040 |
| hsa-miR-30e* | hsa-mir-30e | 1 | 18668040 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 1297 | Unknown | pSILAC | miR-30 | TMEM87A | down 75-50% | 18668040 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000103978 | n_a | n_a | n_a | muscle cell | "malignant tumour, carcinoma" |
Cis-Nats regulation