AutismKB 2.0

Annotation Detail for RPAP1


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Basic Information Top
Gene Symbol:RPAP1 ( DKFZp727M111,FLJ12732,KIAA1403,MGC858 )
Gene Full Name: RNA polymerase II associated protein 1
Band: 15q15.1
Quick LinksEntrez ID:26015; OMIM: 611475; Uniprot ID:RPAP1_HUMAN; ENSEMBL ID: ENSG00000103932; HGNC ID: 24567
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
72Phosphoserine.
80Phosphoserine.
266Phosphoserine.
268Phosphothreonine.
321Phosphothreonine.
603Phosphoserine.
1116Phosphothreonine (By similarity).
Location(AA) Modifications Resource
603Phosphoserine.Swiss-Prot 53.0
1116Phosphothreonine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
72Phosphoserine(CDC2)HMM predict
76MethylarginineHMM predict
80Phosphoserine(CDK)HMM predict
80O-linkedHMM predict
115Phosphoserine(CK1)HMM predict
145Phosphothreonine(PKC)HMM predict
187Phosphothreonine(MAPK)HMM predict
201O-linkedHMM predict
203Phosphoserine(IKK)HMM predict
288N-linkedHMM predict
321Phosphothreonine(CDK)HMM predict
321Phosphothreonine(CDC2)HMM predict
321Phosphothreonine(MAPK)HMM predict
351Phosphothreonine(PKC)HMM predict
401Phosphoserine(ATM)HMM predict
497Phosphoserine(ATM)HMM predict
550Phosphotyrosine(Jak)HMM predict
603Phosphoserine(CDK)HMM predict
603Phosphoserine(CDC2)HMM predict
738O-linkedHMM predict
739Phosphothreonine(MAPK)HMM predict
739O-linkedHMM predict
739Phosphothreonine(CDK)HMM predict
747O-linkedHMM predict
751Phosphoserine(IKK)HMM predict
753O-linkedHMM predict
814Phosphoserine(CK2)HMM predict
815Phosphoserine(IKK)HMM predict
837Phosphoserine(ATM)HMM predict
869O-linkedHMM predict
869Phosphoserine(MAPK)HMM predict
1030Phosphoserine(CK1)HMM predict
1030Phosphoserine(IKK)HMM predict
1069Phosphoserine(PKG)HMM predict
1069Phosphoserine(IKK)HMM predict
1073Phosphoserine(ATM)HMM predict
1116Phosphothreonine(MAPK)HMM predict
1118Phosphoserine(IKK)HMM predict
1121Phosphoserine(IKK)HMM predict
1121Phosphoserine(CDC2)HMM predict
1241Phosphoserine(PKA)HMM predict
1305Phosphotyrosine(Abl)HMM predict
1318Phosphoserine(ATM)HMM predict
1357N-linkedHMM predict
1368Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015540
  • Location:chr15 39596667-39623755
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 39626740 39627019 279 3124
H3ac HepG2E 39624248 39624877 629 807
Jun K562GSE19551 39626601 39626982 381 3036
PHF8 293TGSE20725 39623309 39624228 919 13
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
RNAII Tamoxifen-MCF7GSE14664 39595724 39595812 88 900
p130 shRbQuiescentGSE19898 39596213 39596721 508 201
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 39601192 39601518 326 0
CTCF G2GSE9613 39602192 39602822 630 0
CTCF G2GSE9613 39623564 39623903 339 0
ETS1 JurkatGSE17954 39623172 39624001 829 0
Gata1 K562GSE18868 39623148 39624020 872 0
H3K4me3 colorectalcancer 39623155 39623702 547 0
H3ac HepG2E 39623155 39623669 514 0
PHF8 Hs68plusFBSGSE20725 39623103 39624000 897 0
TAFII hESGSE17917 39623406 39623983 577 0
hScc1 BcellGSE12603 39623416 39623903 487 0
p130 QuiescentGSE19898 39623463 39623934 471 0
p130 SenescentGSE19898 39623382 39623889 507 0
p130 shRbQuiescentGSE19898 39623409 39624007 598 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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