Annotation Detail for RAI14

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Basic Information Top

Gene Symbol:	RAI14 ( DKFZp564G013,KIAA1334,NORPEG,RAI13 )
Gene Full Name:	retinoic acid induced 14
Band:	5p13.2
Quick Links	Entrez ID:26064; OMIM: 606586; Uniprot ID:RAI14_HUMAN; ENSEMBL ID: ENSG00000039560; HGNC ID: 14873
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	34691733	34692563	830	127
H3K4me3	colorectal	cancer	34691328	34691913	585	654
Oct1	H2O2-Hela	GSE14283	34680198	34680236	38	12058
Oct1	H2O2-Hela	GSE14283	34691510	34691553	43	743
Oct1	Hela	GSE14283	34680198	34680236	38	12058
Oct1	Hela	GSE14283	34684525	34684564	39	7730
Oct1	Hela	GSE14283	34691510	34691554	44	743
RNAII	Tamoxifen-MCF7	GSE14664	34680197	34680235	38	12059
Rb	Quiescent	GSE19898	34691947	34692214	267	194
Rb	Senescent	GSE19898	34691814	34692420	606	158
Rb	shRbQuiescent	GSE19898	34691979	34692148	169	211
USF1	HepG2	E	34691147	34691801	654	801
USF2	HepG2	E	34691293	34691765	472	746
p130	Quiescent	GSE19898	34691597	34691766	169	593
p130	Quiescent	GSE19898	34691868	34692254	386	214
p130	shRbQuiescent	GSE19898	34691629	34692224	595	348

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	34842450	34843114	664
ER	E2-MCF7	GSE14664	34834364	34834402	38
FOXA1	MCF7	GSE15244	34742547	34742931	384
Fos	K562	GSE19551	34722413	34723934	1521
FoxA1	MCF7	MACSdata	34742838	34743005	167
Gata2	K562	GSE18868	34735465	34736165	700
Oct1	H2O2-Hela	GSE14283	34694893	34694927	34
Oct1	H2O2-Hela	GSE14283	34835973	34836005	32
Oct1	Hela	GSE14283	34724512	34724556	44
Oct1	Hela	GSE14283	34750417	34750451	34
Oct1	Hela	GSE14283	34775561	34775617	56
Oct1	Hela	GSE14283	34775683	34775720	37
Oct1	Hela	GSE14283	34821814	34821848	34
Oct1	Hela	GSE14283	34825173	34825208	35
Oct1	Hela	GSE14283	34834365	34834404	39
Oct1	Hela	GSE14283	34835974	34836004	30
Oct1	Hela	GSE14283	34851843	34851910	67
Oct1	Hela	GSE14283	34864864	34864903	39
Oct1	Hela	GSE14283	34865430	34865459	29
RARA	MCF7	GSE15244	34742583	34742931	348
TFAP2C	MCF7	GSE21234	34742678	34743201	523
p130	Senescent	GSE19898	34749131	34749341	210

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7b	hsa-let-7b	22	18668040
hsa-let-7b*	hsa-let-7b	22	18668040
hsa-miR-1	hsa-mir-1-2	18	18668040
hsa-miR-1	hsa-mir-1-1	20	18668040
hsa-miR-103	hsa-mir-103-2	20	21152985
hsa-miR-103	hsa-mir-103-1	5	21152985
hsa-miR-155	hsa-mir-155	21	18668040
hsa-miR-155*	hsa-mir-155	21	18668040
hsa-miR-16	hsa-mir-16-1	13	18668040
hsa-miR-16	hsa-mir-16-2	3	18668040
hsa-miR-30a	hsa-mir-30a	6	18668040
hsa-miR-30a*	hsa-mir-30a	6	18668040
hsa-miR-30b	hsa-mir-30b	8	18668040
hsa-miR-30b*	hsa-mir-30b	8	18668040
hsa-miR-30c	hsa-mir-30c-2	6	18668040
hsa-miR-30c	hsa-mir-30c-1	1	18668040
hsa-miR-30c-1*	hsa-mir-30c-1	1	18668040
hsa-miR-30c-2*	hsa-mir-30c-2	6	18668040
hsa-miR-30d	hsa-mir-30d	8	18668040
hsa-miR-30d*	hsa-mir-30d	8	18668040
hsa-miR-30e	hsa-mir-30e	1	18668040
hsa-miR-30e*	hsa-mir-30e	1	18668040

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
998	Unknown	pSILAC	miR-155	RAI14	down 50-25%	18668040
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000039560		n_a	n_a	n_a	"epithelium, squamous cell, lymphocyte, muscle cell"	"benign tumour, malignant tumour, carcinoma, sarcoma"

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
20832	mRNA	RAI14	chr5	34692274	34868473	63	EST		chr5	34692273	34693112	Sense/Antisense (SA) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018