AutismKB 2.0

Annotation Detail for LSM14A


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Basic Information Top
Gene Symbol:LSM14A ( C19orf13,DKFZp434D1335,FAM61A,RAP55,RAP55A )
Gene Full Name: LSM14A, SCD6 homolog A (S. cerevisiae)
Band: 19q13.11
Quick LinksEntrez ID:26065; OMIM: 610677; Uniprot ID:LS14A_HUMAN; ENSEMBL ID: ENSG00000105216; HGNC ID: 24489
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2Phosphoserine.
7Phosphotyrosine.
175Phosphothreonine.
178Phosphoserine.
182Phosphoserine.
183Phosphoserine.
192Phosphoserine.
194Phosphothreonine.
201Phosphothreonine.
203Phosphoserine.
216Phosphoserine.
219Phosphoserine.
227Phosphoserine.
291N6-acetyllysine.
377FFD box.
400TFG box.
Location(AA) Modifications Resource
2Phosphoserine.Swiss-Prot 53.0
2PhosphoserinePhospho.ELM 6.0
7Phosphotyrosine.Swiss-Prot 53.0
7PhosphotyrosinePhospho.ELM 6.0
183Phosphoserine (By similarity).Swiss-Prot 53.0
183PhosphoserinePhospho.ELM 6.0
192PhosphoserinePhospho.ELM 6.0
194PhosphothreoninePhospho.ELM 6.0
216Phosphoserine.Swiss-Prot 53.0
216PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
7Phosphotyrosine(Jak)HMM predict
33N-linkedHMM predict
51O-linkedHMM predict
86O-linkedHMM predict
97O-linkedHMM predict
104Phosphoserine(IKK)HMM predict
121Phosphoserine(ATM)HMM predict
124O-linkedHMM predict
127Phosphoserine(IKK)HMM predict
144O-linkedHMM predict
145O-linkedHMM predict
151Phosphoserine(IKK)HMM predict
151O-linkedHMM predict
153Phosphoserine(IKK)HMM predict
153O-linkedHMM predict
155O-linkedHMM predict
172Phosphoserine(CK1)HMM predict
192Phosphoserine(CDC2)HMM predict
216Phosphoserine(CDK)HMM predict
216Phosphoserine(CDC2)HMM predict
219O-linkedHMM predict
227Phosphoserine(ATM)HMM predict
272MethylarginineHMM predict
279MethylarginineHMM predict
363Phosphotyrosine(Syk)HMM predict
384PhosphothreonineHMM predict
384Phosphothreonine(PKA)HMM predict
384PhosphothreonineHMM predict
406MethylarginineHMM predict
410MethylarginineHMM predict
412MethylarginineHMM predict
427MethylarginineHMM predict
435MethylarginineHMM predict
438MethylarginineHMM predict
445MethylarginineHMM predict
445ArginineHMM predict
455Phosphotyrosine(EGFR)HMM predict
458Phosphothreonine(PKC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015578
  • Location:chr19 39355310-39412047
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 39354815 39355559 744 124
H3ac HepG2E 39353618 39353911 293 1546
H3ac HepG2E 39354250 39354778 528 797
Myc K562GSE19551 39348046 39348494 448 7041
PHF8 293TGSE20725 39354441 39355876 1435 152
PHF8 HeLaGSE20725 39354532 39356002 1470 44
Rb SenescentGSE19898 39354292 39354948 656 691
Rb shRbSenescenceGSE19898 39354460 39354704 244 729
TAF HelaGSE8489 39353333 39353911 578 1689
TAF k562GSE8489 39353333 39353911 578 1689
TAF k562GSE8489 39354250 39354742 492 815
USF1 HepG2E 39353766 39353911 145 1472
p130 QuiescentGSE19898 39354374 39354726 352 761
p130 QuiescentGSE19898 39354790 39355209 419 311
p130 SenescentGSE19898 39354366 39355178 812 539
p130 shRbQuiescentGSE19898 39354311 39355195 884 558
p130 shRbSenescentGSE19898 39354163 39355435 1272 512
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 39415574 39416236 662 3858
Oct1 H2O2-HelaGSE14283 39419651 39419679 28 7618
Rb GrowingGSE19898 39419292 39419551 259 7374
Rb QuiescentGSE19898 39419222 39419743 521 7435
Rb SenescentGSE19898 39419217 39419560 343 7341
STAT1 HeLaGSE12783 39415050 39416648 1598 3802
TFAP2C MCF7GSE21234 39415848 39416200 352 3977
hScc1 BcellGSE12603 39424267 39424553 286 12363
p130 QuiescentGSE19898 39419295 39419557 262 7379
p130 SenescentGSE19898 39419239 39419442 203 7293
p130 shRbQuiescentGSE19898 39419264 39419654 390 7412
p130 shRbSenescentGSE19898 39419138 39419647 509 7345
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 39403210 39403518 308 0
CTCF CD4SISSRdata 39403210 39403518 308 0
CTCF G2GSE9613 39403237 39403557 320 0
ETS1 JurkatGSE17954 39354584 39356709 2125 0
FOXA1 MCF7GSE15244 39355759 39356345 586 0
FoxA1 MCF7MACSdata 39401087 39401321 234 0
FoxA1 MCF7MACSdata 39403309 39403534 225 0
H3K4me3 colorectalcancer 39355700 39356101 401 0
Nanog ESGSE20650 39407702 39408234 532 0
P300 T0-glioblastomaGSE21026 39400984 39401660 676 0
P300 T30-glioblastomaGSE21026 39400814 39401497 683 0
PHF8 Hs68minusFBSGSE20725 39354288 39356548 2260 0
PHF8 Hs68plusFBSGSE20725 39354199 39356608 2409 0
TAF k562GSE8489 39356003 39356647 644 0
TAF k562GSE8489 39357009 39357938 929 0
hScc1 BcellGSE12603 39354851 39355859 1008 0
hScc1 BcellGSE12603 39403204 39403557 353 0
hScc1 CdLSGSE12603 39403122 39403628 506 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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