AutismKB 2.0

Annotation Detail for NR6A1


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Basic Information Top
Gene Symbol:NR6A1 ( GCNF,GCNF1,NR61,RTR )
Gene Full Name: nuclear receptor subfamily 6, group A, member 1
Band: 9q33.3
Quick LinksEntrez ID:2649; OMIM: 602778; Uniprot ID:NR6A1_HUMAN; ENSEMBL ID: ENSG00000148200; HGNC ID: 7985
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
94Phosphotyrosine(EGFR)HMM predict
178Phosphoserine(CK1)HMM predict
179Phosphoserine(CDK)HMM predict
191O-linkedHMM predict
191Phosphoserine(CDC2)HMM predict
194Phosphoserine(IKK)HMM predict
195O-linkedHMM predict
201Phosphoserine(IKK)HMM predict
201Phosphoserine(CK1)HMM predict
214Phosphotyrosine(INSR)HMM predict
276Phosphotyrosine(Jak)HMM predict
279Phosphothreonine(PKC)HMM predict
385Phosphoserine(PKG)HMM predict
389Phosphotyrosine(INSR)HMM predict
389Phosphotyrosine(SRC)HMM predict
389Phosphotyrosine(Syk)HMM predict
430SulfotyrosineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001489
  • Location:chr9 126324523-126573396
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 126572855 126574370 1515 216
NRSF JurkatGSE13047 126573122 126574012 890 171
NRSF-mono JurkatQuESTdata 126572876 126574070 1194 77
P300 T30-glioblastomaGSE21026 126572923 126574499 1576 315
PHF8 HeLaGSE20725 126572779 126574518 1739 252
USF1 HepG2E 126573504 126574664 1160 688
USF2 HepG2E 126573432 126574810 1378 725
hScc1 BcellGSE12603 126573191 126573614 423 6
hScc1 BcellGSE12603 126573893 126574737 844 919
hScc1 CdLSGSE12603 126572373 126574586 2213 83
hScc1 G2GSE9613 126572876 126574982 2106 533
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 126419583 126419992 409 0
CTCF CD4GSE12889 126514044 126514342 298 0
CTCF CD4SISSRdata 126419583 126419992 409 0
CTCF CD4SISSRdata 126514044 126514342 298 0
ER MCF7GSE19013 126510766 126511636 870 0
ER MCF7GSE19013 126552112 126552452 340 0
FOXA1 MCF7GSE15244 126373257 126373815 558 0
FOXA1 MCF7GSE15244 126404258 126404748 490 0
FOXA1 MCF7GSE15244 126523045 126523806 761 0
Fos K562GSE19551 126537196 126537626 430 0
FoxA1 MCF7MACSdata 126510758 126510987 229 0
FoxA1 MCF7MACSdata 126523214 126523435 221 0
GABP k562GSE8489 126360971 126361143 172 0
H3K4me2 HCT116GSE10453 126570943 126571704 761 0
H3ac HepG2E 126570367 126571739 1372 0
Myc K562GSE19551 126353933 126354113 180 0
NRSF JurkatSISSRdata 126573168 126573582 414 0
Nanog ESGSE20650 126523181 126523627 446 0
Nanog hESGSE18292 126346966 126347169 203 0
Nanog hESGSE18292 126514112 126514388 276 0
P300 T30-glioblastomaGSE21026 126404249 126404903 654 0
P300 T30-glioblastomaGSE21026 126454606 126455410 804 0
Pol2 GM12878GSE19551 126460142 126460836 694 0
PolII HeLaGSE12783 126459641 126463710 4069 0
RARA MCF7GSE15244 126522537 126523939 1402 0
RARA MCF7GSE15244 126571258 126572189 931 0
Rb GrowingGSE19898 126376819 126376967 148 0
Sox2 hESGSE18292 126338834 126339095 261 0
Stat6 IL-4-hr1GSE17850 126329203 126329756 553 0
TAF HelaGSE8489 126459788 126462778 2990 0
TAF k562GSE8489 126461127 126462648 1521 0
TAF k562GSE8489 126570757 126571829 1072 0
TFAP2C MCF7GSE21234 126373140 126373798 658 0
TFAP2C MCF7GSE21234 126510646 126511228 582 0
USF1 HepG2E 126397650 126399425 1775 0
hScc1 BcellGSE12603 126338783 126339143 360 0
hScc1 BcellGSE12603 126419548 126420253 705 0
hScc1 BcellGSE12603 126513852 126514384 532 0
hScc1 CdLSGSE12603 126338783 126339143 360 0
hScc1 CdLSGSE12603 126419475 126420212 737 0
hScc1 CdLSGSE12603 126513777 126514384 607 0
hScc1 G2GSE9613 126419193 126420109 916 0
hScc1 G2GSE9613 126513579 126514384 805 0
p130 SenescentGSE19898 126329976 126330389 413 0
p130 shRbSenescentGSE19898 126330016 126330308 292 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
27025 mRNA chr9 124500249 124500908 659 mRNA NR6A1 chr9 124364256 124613130 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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