AutismKB 2.0

Annotation Detail for PGBD2


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Basic Information Top
Gene Symbol:PGBD2 ( - )
Gene Full Name: piggyBac transposable element derived 2
Band: 1q
Quick LinksEntrez ID:267002; OMIM: NA; Uniprot ID:PGBD2_HUMAN; ENSEMBL ID: ENSG00000185220; HGNC ID: 19399
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
59Phosphoserine(CK2)HMM predict
123Phosphoserine(IKK)HMM predict
140Phosphoserine(CDC2)HMM predict
159N-linkedHMM predict
162N-linkedHMM predict
355Phosphothreonine(PKC)HMM predict
373Phosphothreonine(PKC)HMM predict
379Phosphothreonine(PKC)HMM predict
434Phosphothreonine(PKC)HMM predict
568Phosphoserine(IKK)HMM predict
579LysineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_170725
  • Location:chr1 247167064-247179966
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Gata2 K562GSE18868 247150112 247150777 665 16620
TAF k562GSE8489 247152060 247152310 250 14880
TAF k562GSE8489 247165686 247166253 567 1095
p130 QuiescentGSE19898 247166461 247167331 870 169
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 247185532 247185857 325 5728
CTCF CD4SISSRdata 247185532 247185857 325 5728
CTCF G2GSE9613 247185448 247186155 707 5835
CTCF G2GSE9613 247187878 247188092 214 8019
Fos K562GSE19551 247187599 247187973 374 7820
GABP k562GSE8489 247197642 247197930 288 17820
Myc K562GSE19551 247187663 247188108 445 7919
TAF k562GSE8489 247197389 247197930 541 17693
hScc1 BcellGSE12603 247185635 247186155 520 5929
hScc1 BcellGSE12603 247197389 247197716 327 17586
hScc1 CdLSGSE12603 247185489 247186155 666 5856
hScc1 G2GSE9613 247185489 247186188 699 5872
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 247167212 247167427 215 0
CTCF CD4SISSRdata 247167212 247167427 215 0
CTCF G2GSE9613 247166902 247167564 662 0
H3ac HepG2E 247169021 247169381 360 0
PHF8 293TGSE20725 247166658 247167470 812 0
PHF8 HeLaGSE20725 247166428 247167989 1561 0
PHF8 Hs68minusFBSGSE20725 247166532 247167783 1251 0
Rb QuiescentGSE19898 247167208 247167450 242 0
Rb SenescentGSE19898 247166855 247167400 545 0
hScc1 BcellGSE12603 247167040 247167702 662 0
p130 shRbQuiescentGSE19898 247167087 247167414 327 0
p130 shRbQuiescentGSE19898 247167676 247168169 493 0
p130 shRbSenescentGSE19898 247167080 247167396 316 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018