AutismKB 2.0

Annotation Detail for SND1


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Basic Information Top
Gene Symbol:SND1 ( TDRD11,p100 )
Gene Full Name: staphylococcal nuclease and tudor domain containing 1
Band: 7q32.1
Quick LinksEntrez ID:27044; OMIM: 602181; Uniprot ID:SND1_HUMAN; ENSEMBL ID: ENSG00000197157; HGNC ID: 30646
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
4Phosphoserine.
10Phosphoserine.
109Phosphotyrosine.
193N6-acetyllysine.
325Nuclear localization signal (Potential).
392Nuclear localization signal (Potential).
429Phosphothreonine.
641N6-acetyllysine.
752N6-acetyllysine.
781Phosphoserine.
908Phosphotyrosine.
909Phosphoserine.
Location(AA) Modifications Resource
109Phosphotyrosine.Swiss-Prot 53.0
429Phosphothreonine.Swiss-Prot 53.0
781Phosphoserine.Swiss-Prot 53.0
908Phosphotyrosine.Swiss-Prot 53.0
908PhosphotyrosinePhospho.ELM 6.0
Location(AA) Modification Resource
7Phosphoserine(IKK)HMM predict
10O-linkedHMM predict
11O-linkedHMM predict
40MethylarginineHMM predict
73Phosphothreonine(MAPK)HMM predict
101N-linkedHMM predict
103Phosphothreonine(CDC2)HMM predict
134Phosphothreonine(PKC)HMM predict
168N-linkedHMM predict
217Phosphotyrosine(Jak)HMM predict
238Phosphoserine(CK2)HMM predict
240Phosphothreonine(MAPK)HMM predict
283N-linkedHMM predict
365Phosphotyrosine(INSR)HMM predict
416N-linkedHMM predict
426PhosphoserineHMM predict
436O-linkedHMM predict
681PhosphoserineHMM predict
681Phosphoserine(PKB)HMM predict
681Phosphoserine(PKG)HMM predict
755Phosphoserine(CDC2)HMM predict
781Phosphoserine(CDC2)HMM predict
785O-linkedHMM predict
895TyrosineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014390
  • Location:chr7 127079437-127519893
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 127078524 127080273 1749 39
H3ac HepG2E 127078573 127079107 534 598
Oct1 H2O2-HelaGSE14283 127074666 127074697 31 4756
Oct1 HelaGSE14283 127064233 127064296 63 15173
Oct1 HelaGSE14283 127074666 127074695 29 4757
PHF8 293TGSE20725 127078684 127080090 1406 51
PHF8 Hs68minusFBSGSE20725 127078499 127079624 1125 376
PHF8 Hs68plusFBSGSE20725 127078207 127080383 2176 143
TAF HelaGSE8489 127078573 127079072 499 615
p130 QuiescentGSE19898 127078485 127079149 664 621
p130 SenescentGSE19898 127078454 127079662 1208 380
p130 shRbQuiescentGSE19898 127078474 127079835 1361 283
p130 shRbSenescentGSE19898 127078538 127079752 1214 293
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 127527647 127528153 506 8007
CTCF G2GSE9613 127530947 127531209 262 11185
ER MCF7GSE19013 127536246 127536871 625 16665
Oct1 HelaGSE14283 127522323 127522380 57 2458
Rb GrowingGSE19898 127531912 127532089 177 12107
Rb SenescentGSE19898 127531818 127532044 226 12038
p130 QuiescentGSE19898 127531807 127532039 232 12030
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 127136025 127136331 306 0
CTCF CD4GSE12889 127220146 127220295 149 0
CTCF CD4SISSRdata 127136025 127136331 306 0
CTCF CD4SISSRdata 127220146 127220295 149 0
CTCF G2GSE9613 127079374 127079855 481 0
CTCF G2GSE9613 127135838 127136511 673 0
CTCF G2GSE9613 127442014 127442477 463 0
CTCF G2GSE9613 127447230 127448076 846 0
CTCF G2GSE9613 127458843 127459715 872 0
CTCF G2GSE9613 127462911 127463441 530 0
CTCF G2GSE9613 127481253 127481574 321 0
CTCF G2GSE9613 127501767 127502157 390 0
CTCF G2GSE9613 127504416 127504778 362 0
CTCF G2GSE9613 127509797 127510211 414 0
CTCF G2GSE9613 127511104 127511944 840 0
CTCF G2GSE9613 127513327 127513634 307 0
CTCF G2GSE9613 127514025 127514259 234 0
CTCF G2GSE9613 127516642 127517013 371 0
ER E2-MCF7GSE14664 127135098 127135137 39 0
ER E2-MCF7GSE14664 127145337 127145389 52 0
ER E2-MCF7GSE14664 127340529 127340586 57 0
ER E2-MCF7GSE14664 127485250 127485284 34 0
ER Fulvestrant-MCF7GSE14664 127128096 127128129 33 0
ER Fulvestrant-MCF7GSE14664 127136805 127136851 46 0
ER Fulvestrant-MCF7GSE14664 127145333 127145384 51 0
ER Fulvestrant-MCF7GSE14664 127432740 127432815 75 0
ER Fulvestrant-MCF7GSE14664 127445363 127445397 34 0
FOXA1 MCF7GSE15244 127187180 127187600 420 0
FOXA1 MCF7GSE15244 127411036 127411675 639 0
Fos K562GSE19551 127078227 127080677 2450 0
Fos K562GSE19551 127265112 127265809 697 0
GABP k562GSE8489 127079343 127080550 1207 0
H3K4me3 colorectalcancer 127079541 127080660 1119 0
H3ac HepG2E 127079541 127083560 4019 0
Myc K562GSE19551 127236576 127237172 596 0
Nanog ESGSE20650 127093121 127093639 518 0
Nanog ESGSE20650 127275314 127275800 486 0
Nanog hESGSE18292 127093127 127093864 737 0
Nanog hESGSE18292 127478666 127478909 243 0
Oct1 H2O2-HelaGSE14283 127083720 127083756 36 0
Oct1 H2O2-HelaGSE14283 127083880 127083907 27 0
Oct1 H2O2-HelaGSE14283 127208389 127208418 29 0
Oct1 H2O2-HelaGSE14283 127250000 127250029 29 0
Oct1 H2O2-HelaGSE14283 127296977 127297007 30 0
Oct1 H2O2-HelaGSE14283 127299935 127299969 34 0
Oct1 H2O2-HelaGSE14283 127339766 127339794 28 0
Oct1 H2O2-HelaGSE14283 127356587 127356627 40 0
Oct1 H2O2-HelaGSE14283 127370437 127370465 28 0
Oct1 H2O2-HelaGSE14283 127419861 127419889 28 0
Oct1 H2O2-HelaGSE14283 127440675 127440703 28 0
Oct1 H2O2-HelaGSE14283 127445070 127445097 27 0
Oct1 H2O2-HelaGSE14283 127478570 127478611 41 0
Oct1 H2O2-HelaGSE14283 127519354 127519396 42 0
Oct1 HelaGSE14283 127082689 127082726 37 0
Oct1 HelaGSE14283 127083875 127083918 43 0
Oct1 HelaGSE14283 127110890 127110929 39 0
Oct1 HelaGSE14283 127128091 127128131 40 0
Oct1 HelaGSE14283 127192145 127192179 34 0
Oct1 HelaGSE14283 127225982 127226056 74 0
Oct1 HelaGSE14283 127248654 127248686 32 0
Oct1 HelaGSE14283 127275219 127275274 55 0
Oct1 HelaGSE14283 127296936 127297008 72 0
Oct1 HelaGSE14283 127297418 127297450 32 0
Oct1 HelaGSE14283 127299938 127299974 36 0
Oct1 HelaGSE14283 127300192 127300225 33 0
Oct1 HelaGSE14283 127313834 127313866 32 0
Oct1 HelaGSE14283 127328774 127328845 71 0
Oct1 HelaGSE14283 127370436 127370466 30 0
Oct1 HelaGSE14283 127406332 127406391 59 0
Oct1 HelaGSE14283 127432743 127432793 50 0
Oct1 HelaGSE14283 127445362 127445398 36 0
Oct1 HelaGSE14283 127468866 127468900 34 0
Oct1 HelaGSE14283 127473993 127474021 28 0
Oct1 HelaGSE14283 127478566 127478612 46 0
Oct1 HelaGSE14283 127494956 127495062 106 0
Oct1 HelaGSE14283 127501696 127501726 30 0
Oct1 HelaGSE14283 127508335 127508378 43 0
Oct1 HelaGSE14283 127512854 127512899 45 0
Oct1 HelaGSE14283 127514295 127514328 33 0
Oct1 HelaGSE14283 127519354 127519397 43 0
P300 T30-glioblastomaGSE21026 127203799 127204547 748 0
RARA MCF7GSE15244 127292527 127292770 243 0
RARA MCF7GSE15244 127448560 127449180 620 0
RNAII Tamoxifen-MCF7GSE14664 127243911 127243997 86 0
Sox2 hESGSE18292 127283076 127283614 538 0
Stat6 IL-4-hr4GSE17850 127295589 127296111 522 0
TAF HelaGSE8489 127079506 127080730 1224 0
TAF k562GSE8489 127079718 127080660 942 0
TFAP2C MCF7GSE21234 127260639 127261174 535 0
TFAP2C MCF7GSE21234 127448500 127449148 648 0
TFAP2C MCF7GSE21234 127462981 127463341 360 0
hScc1 BcellGSE12603 127135967 127136399 432 0
hScc1 G2GSE9613 127135838 127136547 709 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-34a hsa-mir-34a 1 20883704
hsa-miR-34a* hsa-mir-34a 1 20883704
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
24597 mRNA SND1 chr7 126886184 127326609 3877 mRNA LRRC4 chr7 127261076 127264953 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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