AutismKB 2.0

Annotation Detail for LAMP3


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Basic Information Top
Gene Symbol:LAMP3 ( CD208,DC-LAMP,DCLAMP,LAMP,TSC403 )
Gene Full Name: lysosomal-associated membrane protein 3
Band: 3q27.1
Quick LinksEntrez ID:27074; OMIM: 605883; Uniprot ID:LAMP3_HUMAN; ENSEMBL ID: ENSG00000078081; HGNC ID: 14582
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
112N-linked (GlcNAc...) (Potential).
158N-linked (GlcNAc...) (Potential).
164N-linked (GlcNAc...) (Potential).
200N-linked (GlcNAc...) (Potential).
232N-linked (GlcNAc...) (Potential).
266N-linked (GlcNAc...) (Potential).
291N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
112N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
158N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
164N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
200N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
232N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
266N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
291N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
6Phosphoserine(PKG)HMM predict
36Phosphotyrosine(SRC)HMM predict
36SulfotyrosineHMM predict
37Phosphoserine(ATM)HMM predict
37Phosphoserine(CAMK2)HMM predict
85O-linkedHMM predict
87O-linkedHMM predict
94O-linkedHMM predict
96O-linkedHMM predict
103O-linkedHMM predict
110Phosphothreonine(MAPK)HMM predict
112N-linkedHMM predict
113N-linkedHMM predict
133O-linkedHMM predict
147O-linkedHMM predict
148O-linkedHMM predict
149O-linkedHMM predict
149O-linkedHMM predict
150O-linkedHMM predict
150O-linkedHMM predict
151O-linkedHMM predict
155O-linkedHMM predict
158N-linkedHMM predict
160O-linkedHMM predict
163O-linkedHMM predict
164N-linkedHMM predict
167O-linkedHMM predict
181Phosphothreonine(PKC)HMM predict
194O-linkedHMM predict
195O-linkedHMM predict
200N-linkedHMM predict
202O-linkedHMM predict
209O-linkedHMM predict
209O-linkedHMM predict
210O-linkedHMM predict
215O-linkedHMM predict
215O-linkedHMM predict
221O-linkedHMM predict
228Phosphotyrosine(SRC)HMM predict
232N-linkedHMM predict
256Phosphoserine(CDC2)HMM predict
266N-linkedHMM predict
291N-linkedHMM predict
302Phosphotyrosine(INSR)HMM predict
302Phosphotyrosine(EGFR)HMM predict
311Phosphothreonine(PKC)HMM predict
319Phosphotyrosine(SRC)HMM predict
378Phosphoserine(CK1)HMM predict
413TyrosineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014398
  • Location:chr3 184322697-184363316
  • strand:-
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 184315390 184315563 173 7221
CTCF G2GSE9613 184316707 184317012 305 5838
CTCF G2GSE9613 184318970 184319182 212 3622
hScc1 BcellGSE12603 184316707 184317012 305 5838
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 184353883 184355199 1316 0
CTCF CD4GSE12889 184322780 184323180 400 0
CTCF CD4SISSRdata 184322780 184323180 400 0
CTCF G2GSE9613 184322675 184323319 644 0
CTCF G2GSE9613 184342552 184342930 378 0
CTCF G2GSE9613 184359676 184360105 429 0
CTCF G2GSE9613 184363047 184363399 352 0
FOXA1 MCF7GSE15244 184355822 184356534 712 0
NFkBII GM12892GSE19485 184361735 184363638 1903 0
P300 T0-glioblastomaGSE21026 184356476 184357467 991 0
hScc1 BcellGSE12603 184322760 184323283 523 0
hScc1 BcellGSE12603 184352407 184352578 171 0
hScc1 BcellGSE12603 184362902 184363399 497 0
hScc1 CdLSGSE12603 184322412 184323319 907 0
hScc1 G2GSE9613 184322594 184323723 1129 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 19420057
hsa-let-7a hsa-let-7a-2 11 19420057
hsa-let-7a hsa-let-7a-3 22 19420057
hsa-let-7a* hsa-let-7a-1 9 19420057
hsa-let-7a* hsa-let-7a-3 22 19420057
hsa-let-7b hsa-let-7b 22 19420057
hsa-let-7b* hsa-let-7b 22 19420057
hsa-let-7c hsa-let-7c 21 19420057
hsa-let-7c* hsa-let-7c 21 19420057
hsa-let-7d hsa-let-7d 9 19420057
hsa-let-7d* hsa-let-7d 9 19420057
hsa-let-7e hsa-let-7e 19 19420057
hsa-let-7e* hsa-let-7e 19 19420057
hsa-let-7f hsa-let-7f-1 9 19420057
hsa-let-7f hsa-let-7f-2 X 19420057
hsa-let-7f-1* hsa-let-7f-1 9 19420057
hsa-let-7f-2* hsa-let-7f-2 X 19420057
hsa-let-7g hsa-let-7g 3 19420057
hsa-let-7g* hsa-let-7g 3 19420057
hsa-let-7i hsa-let-7i 12 19420057
hsa-let-7i* hsa-let-7i 12 19420057
hsa-miR-1 hsa-mir-1-2 18 19420057
hsa-miR-1 hsa-mir-1-1 20 19420057
hsa-miR-155 hsa-mir-155 21 20078880
hsa-miR-155* hsa-mir-155 21 20078880
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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