Annotation Detail for GPC3
Basic Information Top
| Gene Symbol: | GPC3 ( DGSX,GTR2-2,MXR7,OCI-5,SDYS,SGB,SGBS,SGBS1 ) |
|---|---|
| Gene Full Name: | glypican 3 |
| Band: | Xq26.2 |
| Quick Links | Entrez ID:2719; OMIM: 300037; Uniprot ID:GPC3_HUMAN; ENSEMBL ID: ENSG00000147257; HGNC ID: 4451 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 124 | N-linked (GlcNAc...) (Potential). | |
| 241 | N-linked (GlcNAc...) (Potential). | |
| 418 | N-linked (GlcNAc...) (Potential). | |
| 495 | O-linked (Xyl...) (heparan sulfate) | |
| 509 | O-linked (Xyl...) (heparan sulfate) | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 124 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 241 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 418 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 495 | O-linked (Xyl...) (heparan sulfate)(Potential). | Swiss-Prot 53.0 |
| 509 | O-linked (Xyl...) (heparan sulfate)(Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 55 | Phosphothreonine(CDC2) | HMM predict |
| 55 | Phosphothreonine(CDK) | HMM predict |
| 124 | N-linked | HMM predict |
| 127 | N-linked | HMM predict |
| 134 | Phosphotyrosine(EGFR) | HMM predict |
| 138 | Phosphothreonine(MAPK) | HMM predict |
| 241 | N-linked | HMM predict |
| 242 | Phosphothreonine(PKC) | HMM predict |
| 257 | Phosphothreonine(PKC) | HMM predict |
| 361 | Phosphotyrosine(Syk) | HMM predict |
| 362 | Sulfotyrosine | HMM predict |
| 418 | N-linked | HMM predict |
| 424 | N-linked | HMM predict |
| 477 | Phosphoserine(PKB) | HMM predict |
| 539 | Phosphoserine(ATM) | HMM predict |
- RefSeq ID: NM_004484
- Location:chrX 132497443-132947331
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3K27me3 | colorectal | cancer | 132948694 | 132949736 | 1042 | 1884 |
| H3ac | HepG2 | E | 132948694 | 132949660 | 966 | 1846 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 132483915 | 132484195 | 280 | 13389 |
| CTCF | G2 | GSE9613 | 132492858 | 132493037 | 179 | 4496 |
| Oct1 | Hela | GSE14283 | 132485710 | 132485782 | 72 | 11698 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CBP | T30-glioblastoma | GSE21026 | 132687745 | 132688494 | 749 | 0 |
| CTCF | CD4 | GSE12889 | 132632225 | 132632347 | 122 | 0 |
| CTCF | CD4 | GSE12889 | 132660091 | 132660227 | 136 | 0 |
| CTCF | CD4 | GSE12889 | 132707233 | 132707408 | 175 | 0 |
| CTCF | CD4 | GSE12889 | 132737895 | 132738057 | 162 | 0 |
| CTCF | CD4 | GSE12889 | 132754165 | 132754472 | 307 | 0 |
| CTCF | CD4 | GSE12889 | 132800772 | 132801048 | 276 | 0 |
| CTCF | CD4 | SISSRdata | 132632225 | 132632347 | 122 | 0 |
| CTCF | CD4 | SISSRdata | 132660091 | 132660227 | 136 | 0 |
| CTCF | CD4 | SISSRdata | 132707233 | 132707408 | 175 | 0 |
| CTCF | CD4 | SISSRdata | 132737895 | 132738057 | 162 | 0 |
| CTCF | CD4 | SISSRdata | 132754165 | 132754472 | 307 | 0 |
| CTCF | CD4 | SISSRdata | 132800772 | 132801048 | 276 | 0 |
| CTCF | G2 | GSE9613 | 132499125 | 132499264 | 139 | 0 |
| CTCF | G2 | GSE9613 | 132632141 | 132632355 | 214 | 0 |
| CTCF | G2 | GSE9613 | 132737437 | 132738230 | 793 | 0 |
| CTCF | G2 | GSE9613 | 132753963 | 132754559 | 596 | 0 |
| CTCF | G2 | GSE9613 | 132800681 | 132800997 | 316 | 0 |
| CTCF | G2 | GSE9613 | 132883504 | 132883891 | 387 | 0 |
| CTCF | G2 | GSE9613 | 132946638 | 132947619 | 981 | 0 |
| FOXA1 | MCF7 | GSE15244 | 132589404 | 132590028 | 624 | 0 |
| FOXA1 | MCF7 | GSE15244 | 132637163 | 132638817 | 1654 | 0 |
| FOXA1 | MCF7 | GSE15244 | 132687844 | 132688612 | 768 | 0 |
| FOXA1 | MCF7 | GSE15244 | 132885361 | 132885568 | 207 | 0 |
| FoxA1 | MCF7 | MACSdata | 132638187 | 132638490 | 303 | 0 |
| H3ac | HepG2 | E | 132941048 | 132941789 | 741 | 0 |
| H3ac | HepG2 | E | 132942587 | 132946801 | 4214 | 0 |
| Nanog | hES | GSE18292 | 132896874 | 132897124 | 250 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 132556724 | 132556753 | 29 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 132591879 | 132591905 | 26 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 132847807 | 132847838 | 31 | 0 |
| Oct1 | Hela | GSE14283 | 132533475 | 132533508 | 33 | 0 |
| Oct1 | Hela | GSE14283 | 132865859 | 132865916 | 57 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 132687668 | 132688560 | 892 | 0 |
| PAX3-FKHR | Rh4 | GSE19063 | 132841539 | 132843336 | 1797 | 0 |
| RARA | MCF7 | GSE15244 | 132637612 | 132638580 | 968 | 0 |
| RARA | MCF7 | GSE15244 | 132687844 | 132688274 | 430 | 0 |
| RARA | MCF7 | GSE15244 | 132885179 | 132885684 | 505 | 0 |
| RARG | MCF7 | GSE15244 | 132637198 | 132638609 | 1411 | 0 |
| RARG | MCF7 | GSE15244 | 132687914 | 132688310 | 396 | 0 |
| RNAII | Tamoxifen-MCF7 | GSE14664 | 132644941 | 132645013 | 72 | 0 |
| hScc1 | Bcell | GSE12603 | 132754096 | 132754488 | 392 | 0 |
| hScc1 | Bcell | GSE12603 | 132883504 | 132883755 | 251 | 0 |
| hScc1 | CdLS | GSE12603 | 132631994 | 132632386 | 392 | 0 |
| hScc1 | CdLS | GSE12603 | 132737913 | 132738230 | 317 | 0 |
| hScc1 | CdLS | GSE12603 | 132753963 | 132754488 | 525 | 0 |
| hScc1 | CdLS | GSE12603 | 132883469 | 132883855 | 386 | 0 |
| hScc1 | G2 | GSE9613 | 132499021 | 132499264 | 243 | 0 |
| hScc1 | G2 | GSE9613 | 132631562 | 132632472 | 910 | 0 |
| hScc1 | G2 | GSE9613 | 132737913 | 132738160 | 247 | 0 |
| hScc1 | G2 | GSE9613 | 132753843 | 132754559 | 716 | 0 |
| hScc1 | G2 | GSE9613 | 132800753 | 132801205 | 452 | 0 |
| hScc1 | G2 | GSE9613 | 132883469 | 132883855 | 386 | 0 |
| p130 | Quiescent | GSE19898 | 132521600 | 132521822 | 222 | 0 |
| p63 | ME180 | GSE6132 | 132509051 | 132509313 | 262 | 0 |
Validated miRNA targets