Annotation Detail for BBS9

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Basic Information Top

Gene Symbol:	BBS9 ( B1,C18,D1,MGC118917,PTHB1 )
Gene Full Name:	Bardet-Biedl syndrome 9
Band:	7p14.3
Quick Links	Entrez ID:27241; OMIM: 607968; Uniprot ID:PTHB1_HUMAN; ENSEMBL ID: ENSG00000122507; HGNC ID: 30000
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

No data

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	33135132	33135466	334	378
ETS1	Jurkat	GSE17954	33134776	33136060	1284	259
P300	T30-glioblastoma	GSE21026	33135023	33136147	1124	92
PHF8	293T	GSE20725	33134917	33136173	1256	132
PHF8	HeLa	GSE20725	33134741	33135944	1203	334
hScc1	Bcell	GSE12603	33134838	33135833	995	341

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	33191885	33192185	300
CTCF	CD4	SISSRdata	33191885	33192185	300
CTCF	G2	GSE9613	33386213	33386440	227
FOXA1	MCF7	GSE15244	33135274	33136225	951
FOXA1	MCF7	GSE15244	33478698	33479245	547
NRSF	mAb	Jurkat	33384192	33384337	145
Nanog	ES	GSE20650	33222700	33223015	315
Nanog	ES	GSE20650	33297816	33298255	439
Nanog	hES	GSE18292	33297800	33298305	505
Nanog	hES	GSE18292	33424389	33424976	587
Nanog	hES	GSE18292	33482712	33482945	233
Oct1	H2O2-Hela	GSE14283	33247955	33248007	52
Oct1	H2O2-Hela	GSE14283	33333676	33333708	32
Oct1	Hela	GSE14283	33247956	33248007	51
Oct1	Hela	GSE14283	33249274	33249302	28
Oct1	Hela	GSE14283	33259576	33259603	27
Oct1	Hela	GSE14283	33273844	33273882	38
Oct1	Hela	GSE14283	33333670	33333704	34
Stat6	IL-4-hr4	GSE17850	33492229	33492718	489
TFAP2C	MCF7	GSE21234	33316639	33316925	286
hScc1	CdLS	GSE12603	33191897	33192305	408
p63	keratinocytes	GSE17611	33293898	33294653	755

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-101	hsa-mir-101-1	1	21098446
hsa-miR-101	hsa-mir-101-2	9	21098446
hsa-miR-124	hsa-mir-124-1	8	17344415
hsa-miR-124	hsa-mir-124-2	8	17344415
hsa-miR-124	hsa-mir-124-3	20	17344415
hsa-miR-183	hsa-mir-183	7	19940135
hsa-miR-183*	hsa-mir-183	7	19940135
hsa-miR-192	hsa-mir-192	11	17360662
hsa-miR-192*	hsa-mir-192	11	17360662
hsa-miR-204	hsa-mir-204	9	20691260
hsa-miR-210	hsa-mir-210	11	19386621
hsa-miR-215	hsa-mir-215	1	17360662
hsa-miR-223	hsa-mir-223	X	21098446
hsa-miR-223*	hsa-mir-223	X	21098446
hsa-miR-27a	hsa-mir-27a	19	21149577
hsa-miR-27a*	hsa-mir-27a	19	21149577
hsa-miR-328	hsa-mir-328	16	21098446
hsa-miR-338-3p	hsa-mir-338	17	19386621
hsa-miR-33a	hsa-mir-33a	22	19386621
hsa-miR-33a*	hsa-mir-33a	22	19386621
hsa-miR-382	hsa-mir-382	14	20716515
hsa-miR-451	hsa-mir-451	17	19386621
hsa-miR-488	hsa-mir-488	1	20828368
hsa-miR-488*	hsa-mir-488	1	20828368
hsa-miR-499-3p	hsa-mir-499	20	21098446
hsa-miR-499-5p	hsa-mir-499	20	21098446
hsa-miR-664	hsa-mir-664	0	21098446
hsa-miR-664*	hsa-mir-664	0	21098446
hsa-miR-92a	hsa-mir-92a-1	13	20484043
hsa-miR-92a	hsa-mir-92a-2	X	20484043

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018