Annotation Detail for CHMP2A
Basic Information Top
| Gene Symbol: | CHMP2A ( BC-2,BC2,CHMP2,VPS2,VPS2A ) |
|---|---|
| Gene Full Name: | chromatin modifying protein 2A |
| Band: | 19q13.43 |
| Quick Links | Entrez ID:27243; OMIM: 610893; Uniprot ID:CHM2A_HUMAN; ENSEMBL ID: ENSG00000130724; HGNC ID: 30216 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 1 | N-acetylmethionine. | |
| 203 | Phosphoserine. | |
| 220 | MIT-interacting motif. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 1 | N-acetylmethionine. | Swiss-Prot 53.0 |
| 203 | Phosphoserine. | Swiss-Prot 53.0 |
| 203 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 10 | Phosphothreonine(PKA) | HMM predict |
| 10 | Phosphothreonine(PKC) | HMM predict |
| 10 | Phosphothreonine(CDK) | HMM predict |
| 38 | Phosphothreonine(PKC) | HMM predict |
- RefSeq ID: NM_014453
- Location:chr19 63754745-63758297
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| hScc1 | Bcell | GSE12603 | 63758044 | 63758573 | 529 | 11 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ETS1 | Jurkat | GSE17954 | 63757628 | 63758800 | 1172 | 0 |
| HIF1 | Hypo | HepG2 | 63758019 | 63758573 | 554 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7b | hsa-let-7b | 22 | 18668040 |
| hsa-let-7b* | hsa-let-7b | 22 | 18668040 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 18668040 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 18668040 |
| hsa-miR-155 | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-155* | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 18668040 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 18668040 |
| hsa-miR-30a | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30a* | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30b | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30b* | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-1* | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-2* | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30d | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30d* | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30e | hsa-mir-30e | 1 | 18668040 |
| hsa-miR-30e* | hsa-mir-30e | 1 | 18668040 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 843 | Unknown | pSILAC | let-7b | CHMP2A | down 50-25% | 18668040 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000130724 | n_a | n_a | n_a | "epithelium, squamous cell, lymphocyte, macrophage, muscle cell" | "benign tumour, malignant tumour, carcinoma, sarcoma" |
Cis-Nats regulation