AutismKB 2.0

Annotation Detail for PCDH17


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Basic Information Top
Gene Symbol:PCDH17 ( PCDH68,PCH68 )
Gene Full Name: protocadherin 17
Band: 13q21.1
Quick LinksEntrez ID:27253; OMIM: 611760; Uniprot ID:PCD17_HUMAN; ENSEMBL ID: ENSG00000118946; HGNC ID: 14267
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
22N-linked (GlcNAc...) (Potential).
188Cell attachment site (Potential).
266N-linked (GlcNAc...) (Potential).
439N-linked (GlcNAc...) (Potential).
453N-linked (GlcNAc...) (Potential).
504N-linked (GlcNAc...) (Potential).
566N-linked (GlcNAc...) (Potential).
590N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
22N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
266N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
439N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
453N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
504N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
566N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
590N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
7S-palmitoylHMM predict
8S-palmitoylHMM predict
17Phosphothreonine(PKC)HMM predict
22N-linkedHMM predict
23Phosphotyrosine(INSR)HMM predict
24Phosphoserine(CK2)HMM predict
133Phosphoserine(CK1)HMM predict
266N-linkedHMM predict
311Phosphotyrosine(INSR)HMM predict
418Phosphotyrosine(Syk)HMM predict
422Phosphotyrosine(Syk)HMM predict
439N-linkedHMM predict
453N-linkedHMM predict
455O-linkedHMM predict
504N-linkedHMM predict
524Phosphotyrosine(Jak)HMM predict
528N-linkedHMM predict
531N-linkedHMM predict
566N-linkedHMM predict
590N-linkedHMM predict
672Phosphothreonine(PKC)HMM predict
685Phosphoserine(IKK)HMM predict
687Phosphoserine(IKK)HMM predict
788Phosphoserine(CDC2)HMM predict
788Phosphoserine(CDK)HMM predict
790O-linkedHMM predict
808Phosphoserine(CDK)HMM predict
808Phosphoserine(CDC2)HMM predict
808Phosphoserine(MAPK)HMM predict
822N-linkedHMM predict
842N-linkedHMM predict
844O-linkedHMM predict
846Phosphothreonine(MAPK)HMM predict
846Phosphothreonine(CDK)HMM predict
852Phosphoserine(PKA)HMM predict
900Phosphoserine(CK2)HMM predict
908Phosphoserine(IKK)HMM predict
927Phosphoserine(ATM)HMM predict
939N-linkedHMM predict
987Phosphotyrosine(SRC)HMM predict
987Phosphotyrosine(Syk)HMM predict
991N-linkedHMM predict
1036O-linkedHMM predict
1037Phosphoserine(CK1)HMM predict
1038PhosphoserineHMM predict
1038Phosphoserine(CDC2)HMM predict
1038Phosphoserine(CDK)HMM predict
1049Phosphoserine(CK1)HMM predict
1069Phosphoserine(ATM)HMM predict
1071Phosphotyrosine(Syk)HMM predict
1076Phosphoserine(ATM)HMM predict
1078Phosphotyrosine(INSR)HMM predict
1078Phosphotyrosine(Syk)HMM predict
1080Phosphoserine(CDC2)HMM predict
1080Phosphoserine(CDK)HMM predict
1111Phosphoserine(CK1)HMM predict
1152AsparagineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001040429
  • Location:chr13 57103789-57201065
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 57097095 57097227 132 6629
CTCF CD4SISSRdata 57097095 57097227 132 6629
CTCF G2GSE9613 57096737 57097345 608 6749
CTCF G2GSE9613 57101737 57101993 256 1925
H3K4me3 colorectalcancer 57103243 57103773 530 282
hScc1 BcellGSE12603 57096910 57097345 435 6662
hScc1 CdLSGSE12603 57096948 57097576 628 6528
hScc1 G2GSE9613 57096737 57097421 684 6711
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 57204891 57204952 61 3856
hScc1 BcellGSE12603 57209308 57209505 197 8341
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 57105730 57107014 1284 0
CTCF G2GSE9613 57197087 57197295 208 0
KLF4 hESGSE17917 57104530 57104762 232 0
Oct1 H2O2-HelaGSE14283 57143670 57143697 27 0
hScc1 BcellGSE12603 57105730 57106035 305 0
hScc1 BcellGSE12603 57106514 57106915 401 0
hScc1 BcellGSE12603 57196949 57197227 278 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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