AutismKB 2.0

Annotation Detail for CSDC2


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Basic Information Top
Gene Symbol:CSDC2 ( PIPPIN,dJ347H13.2 )
Gene Full Name: cold shock domain containing C2, RNA binding
Band: 22q13.2
Quick LinksEntrez ID:27254; OMIM: NA; Uniprot ID:CSDC2_HUMAN; ENSEMBL ID: ENSG00000172346; HGNC ID: 30359
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
7Phosphoserine(CDC2)HMM predict
7O-linkedHMM predict
7Phosphoserine(MAPK)HMM predict
16Phosphoserine(MAPK)HMM predict
16Phosphoserine(CDC2)HMM predict
47Phosphoserine(MAPK)HMM predict
47Phosphoserine(CDC2)HMM predict
47O-linkedHMM predict
51Phosphothreonine(PKC)HMM predict
58Phosphoserine(CAMK2)HMM predict
60O-linkedHMM predict
60O-linkedHMM predict
64Phosphoserine(PKG)HMM predict
79Phosphoserine(ATM)HMM predict
89N-linkedHMM predict
105Phosphotyrosine(SRC)HMM predict
105Phosphotyrosine(Jak)HMM predict
141Phosphothreonine(MAPK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014460
  • Location:chr22 40287014-40302609
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 40282280 40282676 396 4537
No data
No data
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-373 hsa-mir-373 19 18227514
hsa-miR-373* hsa-mir-373 19 18227514
No data
Cis-Nats regulation Top

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  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018