AutismKB 2.0

Annotation Detail for LSM1


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Basic Information Top
Gene Symbol:LSM1 ( CASM,YJL124C )
Gene Full Name: LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Band: 8p11.23
Quick LinksEntrez ID:27257; OMIM: 607281; Uniprot ID:LSM1_HUMAN; ENSEMBL ID: ENSG00000175324; HGNC ID: 20472
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014462
  • Location:chr8 38140014-38153182
  • strand:-
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 38137737 38137775 38 2259
Oct1 HelaGSE14283 38137736 38137766 30 2264
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 38148210 38148561 351 0
CTCF CD4SISSRdata 38148210 38148561 351 0
CTCF G2GSE9613 38148736 38148956 220 0
GABP HelaGSE8489 38152177 38152991 814 0
H3K4me3 colorectalcancer 38152059 38152714 655 0
H3ac HepG2E 38149513 38151271 1758 0
H3ac HepG2E 38152059 38152787 728 0
PHF8 Hs68plusFBSGSE20725 38152352 38153947 1595 0
TAF HelaGSE8489 38150128 38151128 1000 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 16756390
hsa-let-7a hsa-let-7a-2 11 16756390
hsa-let-7a hsa-let-7a-3 22 16756390
hsa-let-7a* hsa-let-7a-1 9 16756390
hsa-let-7a* hsa-let-7a-3 22 16756390
hsa-let-7b hsa-let-7b 22 16756390
hsa-let-7b* hsa-let-7b 22 16756390
hsa-let-7c hsa-let-7c 21 16756390
hsa-let-7c* hsa-let-7c 21 16756390
hsa-let-7d hsa-let-7d 9 16756390
hsa-let-7d* hsa-let-7d 9 16756390
hsa-let-7e hsa-let-7e 19 16756390
hsa-let-7e* hsa-let-7e 19 16756390
hsa-let-7f hsa-let-7f-1 9 16756390
hsa-let-7f hsa-let-7f-2 X 16756390
hsa-let-7f-1* hsa-let-7f-1 9 16756390
hsa-let-7f-2* hsa-let-7f-2 X 16756390
hsa-let-7g hsa-let-7g 3 16756390
hsa-let-7g* hsa-let-7g 3 16756390
hsa-let-7i hsa-let-7i 12 16756390
hsa-let-7i* hsa-let-7i 12 16756390
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
25311 mRNA BAG4 chr8 38153262 38187694 64 mRNA LSM1 chr8 38140374 38153326Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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