Annotation Detail for LSM3
Basic Information Top
| Gene Symbol: | LSM3 ( SMX4,USS2,YLR438C ) |
|---|---|
| Gene Full Name: | LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) |
| Band: | 3p25.1 |
| Quick Links | Entrez ID:27258; OMIM: 607283; Uniprot ID:LSM3_HUMAN; ENSEMBL ID: ENSG00000170860; HGNC ID: 17874 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 2 | N-acetylalanine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 2 | N-acetylalanine. | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 30 | Phosphotyrosine(EGFR) | HMM predict |
| 30 | Phosphotyrosine(INSR) | HMM predict |
| 71 | Phosphotyrosine(EGFR) | HMM predict |
| 71 | Phosphotyrosine(INSR) | HMM predict |
| 71 | Phosphotyrosine(SRC) | HMM predict |
| 71 | Phosphotyrosine(Syk) | HMM predict |
| 75 | Phosphotyrosine(Syk) | HMM predict |
- RefSeq ID: NM_014463
- Location:chr3 14195340-14214839
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| FOXA1 | MCF7 | GSE15244 | 14195116 | 14195562 | 446 | 2 |
| Nanog | ES | GSE20650 | 14195106 | 14195412 | 306 | 82 |
| p130 | Quiescent | GSE19898 | 14194904 | 14195595 | 691 | 91 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 14220033 | 14220271 | 238 | 5313 |
| CTCF | CD4 | SISSRdata | 14220033 | 14220271 | 238 | 5313 |
| CTCF | G2 | GSE9613 | 14220142 | 14220508 | 366 | 5486 |
| CTCF | G2 | GSE9613 | 14226453 | 14226769 | 316 | 11772 |
| CTCF | G2 | GSE9613 | 14229211 | 14229576 | 365 | 14554 |
| ER | MCF7 | GSE19013 | 14218615 | 14219374 | 759 | 4155 |
| FOXA1 | MCF7 | GSE15244 | 14220105 | 14221493 | 1388 | 5960 |
| Gata2 | K562 | GSE18868 | 14221036 | 14221871 | 835 | 6614 |
| RARA | MCF7 | GSE15244 | 14218164 | 14221752 | 3588 | 5119 |
| RARG | MCF7 | GSE15244 | 14218124 | 14221717 | 3593 | 5081 |
| USF1 | HepG2 | E | 14233001 | 14233208 | 207 | 18265 |
| USF2 | HepG2 | E | 14233001 | 14233208 | 207 | 18265 |
| hScc1 | Bcell | GSE12603 | 14219424 | 14220579 | 1155 | 5162 |
| hScc1 | CdLS | GSE12603 | 14219822 | 14220471 | 649 | 5307 |
| hScc1 | CdLS | GSE12603 | 14220850 | 14221180 | 330 | 6176 |
| hScc1 | G2 | GSE9613 | 14219900 | 14220543 | 643 | 5382 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| E2F4 | G0 | GSE7516 | 14195050 | 14195634 | 584 | 0 |
| H3K4me3 | colorectal | cancer | 14195597 | 14196035 | 438 | 0 |
| H3ac | HepG2 | E | 14195159 | 14196752 | 1593 | 0 |
| LIN9 | G0 | GSE7516 | 14195050 | 14195896 | 846 | 0 |
| LIN9 | S | GSE7516 | 14195050 | 14195932 | 882 | 0 |
| TAF | k562 | GSE8489 | 14195222 | 14196752 | 1530 | 0 |
| TAFII | hES | GSE17917 | 14195044 | 14195679 | 635 | 0 |
| p130 | shRbSenescent | GSE19898 | 14195198 | 14195703 | 505 | 0 |
| p130 | G0 | GSE7516 | 14195012 | 14195710 | 698 | 0 |
Validated miRNA targets