AutismKB 2.0

Annotation Detail for RAB30


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Basic Information Top
Gene Symbol:RAB30 ( - )
Gene Full Name: RAB30, member RAS oncogene family
Band: 11q14.1
Quick LinksEntrez ID:27314; OMIM: 605693; Uniprot ID:RAB30_HUMAN; ENSEMBL ID: ENSG00000137502; HGNC ID: 9770
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
46Effector region (By similarity).
185Phosphoserine.
200Cysteine methyl ester (Potential).
Location(AA) Modifications Resource
199S-geranylgeranyl cysteine (Bysimilarity).Swiss-Prot 53.0
200S-geranylgeranyl cysteine (Bysimilarity).Swiss-Prot 53.0
Location(AA) Modification Resource
30Phosphothreonine(PKA)HMM predict
73Phosphoserine(IKK)HMM predict
73Phosphoserine(PKB)HMM predict
141Phosphoserine(CK1)HMM predict
182N-linkedHMM predict
185Phosphoserine(CDC2)HMM predict
185Phosphoserine(CDK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014488
  • Location:chr11 82370126-82460531
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 82460101 82461485 1384 262
FOXA1 MCF7GSE15244 82460609 82461463 854 505
FOXA1 MCF7GSE15244 82475656 82475968 312 15281
GATA3 MCF7GSE15244 82460720 82461463 743 560
H3K4me3 colorectalcancer 82460643 82461463 820 522
H3ac HepG2E 82461801 82462940 1139 1839
Oct1 HelaGSE14283 82479851 82479901 50 19345
PHF8 293TGSE20725 82460023 82461410 1387 185
PHF8 HeLaGSE20725 82460271 82461381 1110 295
RARG MCF7GSE15244 82460643 82461463 820 522
Rb GrowingGSE19898 82460669 82460892 223 249
Rb QuiescentGSE19898 82460598 82460970 372 253
Rb SenescentGSE19898 82460364 82461030 666 166
TAF HelaGSE8489 82460609 82461463 854 505
TAF k562GSE8489 82460680 82461463 783 540
hScc1 CdLSGSE12603 82459722 82461463 1741 61
hScc1 CdLSGSE12603 82475725 82476060 335 15361
p130 QuiescentGSE19898 82460292 82461220 928 225
p130 SenescentGSE19898 82460340 82461121 781 199
p130 shRbQuiescentGSE19898 82460242 82461123 881 151
p130 shRbSenescentGSE19898 82460691 82461185 494 407
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 82364930 82365243 313 5040
GABP k562GSE8489 82366510 82366737 227 3503
Oct1 HelaGSE14283 82368680 82368726 46 1424
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 82439997 82441340 1343 0
CTCF CD4GSE12889 82378638 82378900 262 0
CTCF CD4SISSRdata 82378638 82378900 262 0
ER E2-MCF7GSE14664 82451965 82452005 40 0
ER MCF7GSE19013 82392414 82393594 1180 0
FOXA1 DLD1GSE12801 82440252 82441160 908 0
FOXA1 DLD1GSE12801 82443949 82444266 317 0
FOXA1 MCF7GSE15244 82385749 82386361 612 0
FOXA1 MCF7GSE15244 82395452 82396059 607 0
FOXA1 MCF7GSE15244 82422841 82423373 532 0
FOXA1 MCF7GSE15244 82440035 82441342 1307 0
FOXA1 MCF7GSE15244 82443949 82444266 317 0
FoxA1 MCF7MACSdata 82395667 82395987 320 0
GATA3 MCF7GSE15244 82385643 82386602 959 0
GATA3 MCF7GSE15244 82392687 82393422 735 0
GATA3 MCF7GSE15244 82395452 82395989 537 0
GATA3 MCF7GSE15244 82423014 82423373 359 0
GATA3 MCF7GSE15244 82435671 82436495 824 0
GATA3 MCF7GSE15244 82443949 82444266 317 0
GATA3 MCF7GSE15244 82459430 82459927 497 0
H3K4me2 HCT116GSE10453 82459430 82460247 817 0
H3K4me3 colorectalcancer 82458785 82460007 1222 0
H3ac HepG2E 82457009 82461463 4454 0
Myc K562GSE19551 82396505 82397125 620 0
NRSF pAbJurkat 82441655 82441810 155 0
Oct1 HelaGSE14283 82439763 82439809 46 0
Oct1 HelaGSE14283 82442379 82442406 27 0
Oct1 HelaGSE14283 82447192 82447281 89 0
Oct1 HelaGSE14283 82451960 82452014 54 0
P300 T30-glioblastomaGSE21026 82433264 82434501 1237 0
P300 T30-glioblastomaGSE21026 82440043 82442133 2090 0
P300 T30-glioblastomaGSE21026 82458677 82461315 2638 0
RARA MCF7GSE15244 82385820 82386499 679 0
RARA MCF7GSE15244 82392878 82393327 449 0
RARA MCF7GSE15244 82395487 82396172 685 0
RARA MCF7GSE15244 82422803 82423373 570 0
RARA MCF7GSE15244 82437187 82437794 607 0
RARA MCF7GSE15244 82443949 82444266 317 0
RARA MCF7GSE15244 82458984 82461463 2479 0
RARG MCF7GSE15244 82393115 82393363 248 0
RARG MCF7GSE15244 82395524 82396023 499 0
RARG MCF7GSE15244 82422841 82423373 532 0
RARG MCF7GSE15244 82443949 82444266 317 0
Rb GrowingGSE19898 82460343 82460654 311 0
Rb QuiescentGSE19898 82460407 82460596 189 0
Rb shRbQuiescentGSE19898 82424066 82424273 207 0
Rb shRbSenescenceGSE19898 82457981 82458184 203 0
Stat6 IL-4-hr1GSE17850 82451540 82452395 855 0
TAF HelaGSE8489 82459504 82460034 530 0
TFAP2C MCF7GSE21234 82395484 82396084 600 0
TFAP2C MCF7GSE21234 82413925 82414422 497 0
USF2 HepG2E 82378497 82378996 499 0
USF2 HepG2E 82396398 82396939 541 0
hScc1 BcellGSE12603 82423054 82423373 319 0
hScc1 BcellGSE12603 82459430 82460821 1391 0
hScc1 CdLSGSE12603 82385713 82386253 540 0
hScc1 CdLSGSE12603 82396498 82396789 291 0
hScc1 CdLSGSE12603 82451718 82452148 430 0
p130 SenescentGSE19898 82440952 82441259 307 0
p130 shRbSenescentGSE19898 82459941 82460174 233 0
p130 shRbSenescentGSE19898 82460351 82460618 267 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-125a-3p hsa-mir-125a 19 16331254
hsa-miR-125a-5p hsa-mir-125a 19 16331254
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-195 hsa-mir-195 17 16331254
hsa-miR-195* hsa-mir-195 17 16331254
hsa-miR-200a hsa-mir-200a 1 16331254
hsa-miR-200a* hsa-mir-200a 1 16331254
hsa-miR-224 hsa-mir-224 X 16331254
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
1088 Unknown pSILAC miR-16 RAB30 down 75-50% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000137502 n_a n_a n_a "lymphocyte, muscle cell" malignant tumour
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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