AutismKB 2.0

Annotation Detail for TNRC6A


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Basic Information Top
Gene Symbol:TNRC6A ( CAGH26,DKFZp666E117,FLJ22043,GW1,GW182,KIAA1460,MGC75384,TNRC6 )
Gene Full Name: trinucleotide repeat containing 6A
Band: 16p12.1
Quick LinksEntrez ID:27327; OMIM: 610739; Uniprot ID:TNR6A_HUMAN; ENSEMBL ID: ENSG00000090905; HGNC ID: 11969
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
991Phosphoserine (By similarity).
1470Phosphothreonine.
1585Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
64Phosphoserine(ATM)HMM predict
73N-linkedHMM predict
75O-linkedHMM predict
79O-linkedHMM predict
89Phosphothreonine(PKA)HMM predict
171Phosphoserine(ATM)HMM predict
171Phosphoserine(IKK)HMM predict
173Phosphoserine(CK2)HMM predict
175Phosphoserine(IKK)HMM predict
176Phosphoserine(CK1)HMM predict
192Phosphoserine(IKK)HMM predict
194N-linkedHMM predict
199N-linkedHMM predict
207Phosphotyrosine(INSR)HMM predict
217O-linkedHMM predict
218O-linkedHMM predict
219O-linkedHMM predict
219O-linkedHMM predict
219Phosphoserine(CK1)HMM predict
219Phosphoserine(CK2)HMM predict
221O-linkedHMM predict
221Phosphoserine(IKK)HMM predict
234Phosphoserine(CK1)HMM predict
258Phosphoserine(IKK)HMM predict
260Phosphoserine(CK1)HMM predict
260Phosphoserine(IKK)HMM predict
261Phosphoserine(CK1)HMM predict
261Phosphoserine(CK2)HMM predict
262Phosphoserine(CK2)HMM predict
267N-linkedHMM predict
285N-linkedHMM predict
291Phosphoserine(ATM)HMM predict
335Phosphoserine(CK1)HMM predict
335Phosphoserine(IKK)HMM predict
347Phosphothreonine(PKC)HMM predict
357N-linkedHMM predict
362N-linkedHMM predict
438Phosphoserine(IKK)HMM predict
445N-linkedHMM predict
454N-linkedHMM predict
455N-linkedHMM predict
458N-linkedHMM predict
500N-linkedHMM predict
528N-linkedHMM predict
547N-linkedHMM predict
581Phosphoserine(ATM)HMM predict
581Phosphoserine(IKK)HMM predict
584O-linkedHMM predict
585Phosphoserine(IKK)HMM predict
599MethylarginineHMM predict
627N-linkedHMM predict
631N-linkedHMM predict
633N-linkedHMM predict
644Phosphothreonine(CK2)HMM predict
651Phosphoserine(IKK)HMM predict
675Phosphoserine(CK1)HMM predict
675Phosphoserine(IKK)HMM predict
709N-linkedHMM predict
726Phosphothreonine(CDC2)HMM predict
732O-linkedHMM predict
739Phosphoserine(CDC2)HMM predict
748N-linkedHMM predict
756O-linkedHMM predict
758O-linkedHMM predict
775N-linkedHMM predict
779Phosphoserine(CK1)HMM predict
846Phosphoserine(ATM)HMM predict
850Phosphoserine(IKK)HMM predict
854Phosphoserine(ATM)HMM predict
874Phosphoserine(CDC2)HMM predict
875Phosphoserine(CK2)HMM predict
883Phosphoserine(CK1)HMM predict
905N-linkedHMM predict
906N-linkedHMM predict
914O-linkedHMM predict
919O-linkedHMM predict
919Phosphoserine(ATM)HMM predict
962O-linkedHMM predict
1044Phosphothreonine(MAPK)HMM predict
1056Phosphoserine(CK1)HMM predict
1068O-linkedHMM predict
1068O-linkedHMM predict
1069Phosphothreonine(MAPK)HMM predict
1072O-linkedHMM predict
1073O-linkedHMM predict
1076N-linkedHMM predict
1103O-linkedHMM predict
1107O-linkedHMM predict
1108O-linkedHMM predict
1115Phosphoserine(IKK)HMM predict
1155N-linkedHMM predict
1161N-linkedHMM predict
1162Phosphoserine(CK1)HMM predict
1163Phosphoserine(CK1)HMM predict
1217Phosphoserine(IKK)HMM predict
1217PhosphoserineHMM predict
1252N-linkedHMM predict
1266O-linkedHMM predict
1270Phosphoserine(CK1)HMM predict
1295Phosphoserine(ATM)HMM predict
1297Phosphoserine(IKK)HMM predict
1331N-linkedHMM predict
1356O-linkedHMM predict
1356Phosphoserine(IKK)HMM predict
1372Phosphoserine(CDC2)HMM predict
1470Phosphothreonine(MAPK)HMM predict
1473Phosphoserine(ATM)HMM predict
1503Phosphoserine(CDC2)HMM predict
1540Phosphothreonine(PKC)HMM predict
1553N-linkedHMM predict
1578N-linkedHMM predict
1582O-linkedHMM predict
1582Phosphoserine(CDC2)HMM predict
1582Phosphoserine(MAPK)HMM predict
1582Phosphoserine(CDK)HMM predict
1582Phosphoserine(IKK)HMM predict
1585Phosphoserine(CDC2)HMM predict
1585Phosphoserine(MAPK)HMM predict
1585Phosphoserine(IKK)HMM predict
1599Phosphoserine(CDC2)HMM predict
1599Phosphoserine(CDK)HMM predict
1599Phosphoserine(IKK)HMM predict
1601N-linkedHMM predict
1607N-linkedHMM predict
1631Phosphotyrosine(Syk)HMM predict
1633Phosphothreonine(MAPK)HMM predict
1657Phosphoserine(IKK)HMM predict
1662Phosphoserine(IKK)HMM predict
1664N-linkedHMM predict
1665O-linkedHMM predict
1666O-linkedHMM predict
1687O-linkedHMM predict
1692O-linkedHMM predict
1697Phosphoserine(PKG)HMM predict
1707O-linkedHMM predict
1710N-linkedHMM predict
1726N-linkedHMM predict
1766Phosphothreonine(MAPK)HMM predict
1766Phosphothreonine(CDK)HMM predict
1787N-linkedHMM predict
1843N-linkedHMM predict
1852Phosphoserine(CK2)HMM predict
1852PhosphoserineHMM predict
1865Phosphoserine(IKK)HMM predict
1867Phosphothreonine(MAPK)HMM predict
1869Phosphoserine(CDC2)HMM predict
1869Phosphoserine(ATM)HMM predict
1878Phosphoserine(ATM)HMM predict
1927O-linkedHMM predict
1935Phosphoserine(CK1)HMM predict
1941Phosphoserine(PKB)HMM predict
1942Phosphoserine(CDC2)HMM predict
1942Phosphoserine(CDK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014494
  • Location:chr16 24648549-24745045
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 24647984 24648848 864 134
GABP k562GSE8489 24647380 24647715 335 1002
PHF8 293TGSE20725 24647815 24649149 1334 68
PHF8 HeLaGSE20725 24647813 24649263 1450 12
PHF8 Hs68minusFBSGSE20725 24648072 24648846 774 91
PHF8 Hs68plusFBSGSE20725 24647799 24649225 1426 38
p130 shRbQuiescentGSE19898 24648035 24648430 395 317
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF HelaGSE12889 24753347 24753565 218 8411
CTCF JurkatGSE12889 24753382 24753661 279 8476
CTCF G2GSE9613 24748383 24748596 213 3444
CTCF G2GSE9613 24753356 24753769 413 8517
Myc K562GSE19551 24747982 24748372 390 3132
NRSF mAbJurkat 24751464 24752254 790 6814
NRSF mAbJurkat 24752604 24752956 352 7735
Rb SenescentGSE19898 24753307 24753534 227 8375
STAT1 IFNSISSRdata 24753262 24753688 426 8430
hScc1 CdLSGSE12603 24753356 24753769 413 8517
p130 QuiescentGSE19898 24753435 24753680 245 8512
p130 shRbQuiescentGSE19898 24753431 24753908 477 8624
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 24730464 24731259 795 0
GABP k562GSE8489 24649152 24651202 2050 0
NRSF JurkatGSE13047 24738340 24738638 298 0
NRSF mAbJurkat 24735704 24737311 1607 0
NRSF mAbJurkat 24737785 24738886 1101 0
NRSF-mono JurkatQuESTdata 24738272 24738636 364 0
NRSF-poly JurkatQuESTdata 24738228 24738638 410 0
Nanog hESGSE18292 24649600 24650402 802 0
p63 keratinocytesGSE17611 24677522 24678418 896 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 19841879
hsa-let-7a hsa-let-7a-2 11 19841879
hsa-let-7a hsa-let-7a-3 22 19841879
hsa-let-7a hsa-let-7a-1 9 19838187
hsa-let-7a hsa-let-7a-2 11 19838187
hsa-let-7a hsa-let-7a-3 22 19838187
hsa-let-7a hsa-let-7a-1 9 19716330
hsa-let-7a hsa-let-7a-2 11 19716330
hsa-let-7a hsa-let-7a-3 22 19716330
hsa-let-7a hsa-let-7a-1 9 19710908
hsa-let-7a hsa-let-7a-2 11 19710908
hsa-let-7a hsa-let-7a-3 22 19710908
hsa-let-7a hsa-let-7a-1 9 19398495
hsa-let-7a hsa-let-7a-2 11 19398495
hsa-let-7a hsa-let-7a-3 22 19398495
hsa-let-7a hsa-let-7a-1 9 19131968
hsa-let-7a hsa-let-7a-2 11 19131968
hsa-let-7a hsa-let-7a-3 22 19131968
hsa-let-7a hsa-let-7a-1 9 17671087
hsa-let-7a hsa-let-7a-2 11 17671087
hsa-let-7a hsa-let-7a-3 22 17671087
hsa-let-7a hsa-let-7a-1 9 16906129
hsa-let-7a hsa-let-7a-2 11 16906129
hsa-let-7a hsa-let-7a-3 22 16906129
hsa-let-7a* hsa-let-7a-1 9 19841879
hsa-let-7a* hsa-let-7a-3 22 19841879
hsa-let-7a* hsa-let-7a-1 9 19838187
hsa-let-7a* hsa-let-7a-3 22 19838187
hsa-let-7a* hsa-let-7a-1 9 19716330
hsa-let-7a* hsa-let-7a-3 22 19716330
hsa-let-7a* hsa-let-7a-1 9 19710908
hsa-let-7a* hsa-let-7a-3 22 19710908
hsa-let-7a* hsa-let-7a-1 9 19398495
hsa-let-7a* hsa-let-7a-3 22 19398495
hsa-let-7a* hsa-let-7a-1 9 19131968
hsa-let-7a* hsa-let-7a-3 22 19131968
hsa-let-7a* hsa-let-7a-1 9 17671087
hsa-let-7a* hsa-let-7a-3 22 17671087
hsa-let-7a* hsa-let-7a-1 9 16906129
hsa-let-7a* hsa-let-7a-3 22 16906129
hsa-let-7b hsa-let-7b 22 19841879
hsa-let-7b hsa-let-7b 22 19838187
hsa-let-7b hsa-let-7b 22 19716330
hsa-let-7b hsa-let-7b 22 19710908
hsa-let-7b hsa-let-7b 22 19398495
hsa-let-7b hsa-let-7b 22 19131968
hsa-let-7b hsa-let-7b 22 17671087
hsa-let-7b hsa-let-7b 22 16906129
hsa-let-7b* hsa-let-7b 22 19841879
hsa-let-7b* hsa-let-7b 22 19838187
hsa-let-7b* hsa-let-7b 22 19716330
hsa-let-7b* hsa-let-7b 22 19710908
hsa-let-7b* hsa-let-7b 22 19398495
hsa-let-7b* hsa-let-7b 22 19131968
hsa-let-7b* hsa-let-7b 22 17671087
hsa-let-7b* hsa-let-7b 22 16906129
hsa-let-7c hsa-let-7c 21 19841879
hsa-let-7c hsa-let-7c 21 19838187
hsa-let-7c hsa-let-7c 21 19716330
hsa-let-7c hsa-let-7c 21 19710908
hsa-let-7c hsa-let-7c 21 19398495
hsa-let-7c hsa-let-7c 21 19131968
hsa-let-7c hsa-let-7c 21 17671087
hsa-let-7c hsa-let-7c 21 16906129
hsa-let-7c* hsa-let-7c 21 19841879
hsa-let-7c* hsa-let-7c 21 19838187
hsa-let-7c* hsa-let-7c 21 19716330
hsa-let-7c* hsa-let-7c 21 19710908
hsa-let-7c* hsa-let-7c 21 19398495
hsa-let-7c* hsa-let-7c 21 19131968
hsa-let-7c* hsa-let-7c 21 17671087
hsa-let-7c* hsa-let-7c 21 16906129
hsa-let-7d hsa-let-7d 9 19841879
hsa-let-7d hsa-let-7d 9 19838187
hsa-let-7d hsa-let-7d 9 19716330
hsa-let-7d hsa-let-7d 9 19710908
hsa-let-7d hsa-let-7d 9 19398495
hsa-let-7d hsa-let-7d 9 19131968
hsa-let-7d hsa-let-7d 9 17671087
hsa-let-7d hsa-let-7d 9 16906129
hsa-let-7d* hsa-let-7d 9 19841879
hsa-let-7d* hsa-let-7d 9 19838187
hsa-let-7d* hsa-let-7d 9 19716330
hsa-let-7d* hsa-let-7d 9 19710908
hsa-let-7d* hsa-let-7d 9 19398495
hsa-let-7d* hsa-let-7d 9 19131968
hsa-let-7d* hsa-let-7d 9 17671087
hsa-let-7d* hsa-let-7d 9 16906129
hsa-let-7e hsa-let-7e 19 19841879
hsa-let-7e hsa-let-7e 19 19838187
hsa-let-7e hsa-let-7e 19 19716330
hsa-let-7e hsa-let-7e 19 19710908
hsa-let-7e hsa-let-7e 19 19398495
hsa-let-7e hsa-let-7e 19 19131968
hsa-let-7e hsa-let-7e 19 17671087
hsa-let-7e hsa-let-7e 19 16906129
hsa-let-7e* hsa-let-7e 19 19841879
hsa-let-7e* hsa-let-7e 19 19838187
hsa-let-7e* hsa-let-7e 19 19716330
hsa-let-7e* hsa-let-7e 19 19710908
hsa-let-7e* hsa-let-7e 19 19398495
hsa-let-7e* hsa-let-7e 19 19131968
hsa-let-7e* hsa-let-7e 19 17671087
hsa-let-7e* hsa-let-7e 19 16906129
hsa-let-7f hsa-let-7f-1 9 19841879
hsa-let-7f hsa-let-7f-2 X 19841879
hsa-let-7f hsa-let-7f-1 9 19838187
hsa-let-7f hsa-let-7f-2 X 19838187
hsa-let-7f hsa-let-7f-1 9 19716330
hsa-let-7f hsa-let-7f-2 X 19716330
hsa-let-7f hsa-let-7f-1 9 19710908
hsa-let-7f hsa-let-7f-2 X 19710908
hsa-let-7f hsa-let-7f-1 9 19398495
hsa-let-7f hsa-let-7f-2 X 19398495
hsa-let-7f hsa-let-7f-1 9 19131968
hsa-let-7f hsa-let-7f-2 X 19131968
hsa-let-7f hsa-let-7f-1 9 17671087
hsa-let-7f hsa-let-7f-2 X 17671087
hsa-let-7f hsa-let-7f-1 9 16906129
hsa-let-7f hsa-let-7f-2 X 16906129
hsa-let-7f-1* hsa-let-7f-1 9 19841879
hsa-let-7f-1* hsa-let-7f-1 9 19838187
hsa-let-7f-1* hsa-let-7f-1 9 19716330
hsa-let-7f-1* hsa-let-7f-1 9 19710908
hsa-let-7f-1* hsa-let-7f-1 9 19398495
hsa-let-7f-1* hsa-let-7f-1 9 19131968
hsa-let-7f-1* hsa-let-7f-1 9 17671087
hsa-let-7f-1* hsa-let-7f-1 9 16906129
hsa-let-7f-2* hsa-let-7f-2 X 19841879
hsa-let-7f-2* hsa-let-7f-2 X 19838187
hsa-let-7f-2* hsa-let-7f-2 X 19716330
hsa-let-7f-2* hsa-let-7f-2 X 19710908
hsa-let-7f-2* hsa-let-7f-2 X 19398495
hsa-let-7f-2* hsa-let-7f-2 X 19131968
hsa-let-7f-2* hsa-let-7f-2 X 17671087
hsa-let-7f-2* hsa-let-7f-2 X 16906129
hsa-let-7g hsa-let-7g 3 19841879
hsa-let-7g hsa-let-7g 3 19838187
hsa-let-7g hsa-let-7g 3 19716330
hsa-let-7g hsa-let-7g 3 19710908
hsa-let-7g hsa-let-7g 3 19398495
hsa-let-7g hsa-let-7g 3 19131968
hsa-let-7g hsa-let-7g 3 17671087
hsa-let-7g hsa-let-7g 3 16906129
hsa-let-7g* hsa-let-7g 3 19841879
hsa-let-7g* hsa-let-7g 3 19838187
hsa-let-7g* hsa-let-7g 3 19716330
hsa-let-7g* hsa-let-7g 3 19710908
hsa-let-7g* hsa-let-7g 3 19398495
hsa-let-7g* hsa-let-7g 3 19131968
hsa-let-7g* hsa-let-7g 3 17671087
hsa-let-7g* hsa-let-7g 3 16906129
hsa-let-7i hsa-let-7i 12 19841879
hsa-let-7i hsa-let-7i 12 19838187
hsa-let-7i hsa-let-7i 12 19716330
hsa-let-7i hsa-let-7i 12 19710908
hsa-let-7i hsa-let-7i 12 19398495
hsa-let-7i hsa-let-7i 12 19131968
hsa-let-7i hsa-let-7i 12 17671087
hsa-let-7i hsa-let-7i 12 16906129
hsa-let-7i* hsa-let-7i 12 19841879
hsa-let-7i* hsa-let-7i 12 19838187
hsa-let-7i* hsa-let-7i 12 19716330
hsa-let-7i* hsa-let-7i 12 19710908
hsa-let-7i* hsa-let-7i 12 19398495
hsa-let-7i* hsa-let-7i 12 19131968
hsa-let-7i* hsa-let-7i 12 17671087
hsa-let-7i* hsa-let-7i 12 16906129
hsa-miR-17 hsa-mir-17 13 20215348
hsa-miR-17* hsa-mir-17 13 20215348
hsa-miR-181b hsa-mir-181b-1 1 20976148
hsa-miR-181b hsa-mir-181b-2 9 20976148
hsa-miR-195 hsa-mir-195 17 20976148
hsa-miR-195* hsa-mir-195 17 20976148
hsa-miR-34a hsa-mir-34a 1 20976148
hsa-miR-34a* hsa-mir-34a 1 20976148
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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