Annotation Detail for RRP7A

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Basic Information Top

Gene Symbol:	RRP7A ( BK126B4.3,CGI-96,MGC150422,MGC150423 )
Gene Full Name:	ribosomal RNA processing 7 homolog A (S. cerevisiae)
Band:	22q13.2
Quick Links	Entrez ID:27341; OMIM: NA; Uniprot ID:RRP7A_HUMAN; ENSEMBL ID: ENSG00000189306; HGNC ID: 24286
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
99	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_015703
Location:chr22 41238518-41245751
strand:-

Upstream the gene:7 results
Downstream the gene:0 results
Inside the gene:9 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	41258923	41259099	176	13260
CTCF	CD4	SISSRdata	41258923	41259099	176	13260
Rb	Quiescent	GSE19898	41246626	41246755	129	939
Rb	Senescent	GSE19898	41245525	41246096	571	59
hScc1	Bcell	GSE12603	41259836	41260029	193	14181
p130	Senescent	GSE19898	41245665	41245954	289	58
p130	shRbSenescent	GSE19898	41245682	41245969	287	74

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	41245153	41245604	451	0
H3K4me3	colorectal	cancer	41244767	41245255	488	0
H3ac	HepG2	E	41243770	41245545	1775	0
P300	T30-glioblastoma	GSE21026	41245036	41246187	1151	0
PHF8	293T	GSE20725	41245172	41246102	930	0
PHF8	HeLa	GSE20725	41245218	41246204	986	0
PolII	HeLa	GSE12783	41245253	41246238	985	0
hScc1	Bcell	GSE12603	41240832	41241256	424	0
hScc1	Bcell	GSE12603	41244187	41245900	1713	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
17551	mRNA	SERHL	chr22	41221093	41233064	555	mRNA	CGI-96	chr22	41231698	41240238	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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