AutismKB 2.0

Annotation Detail for SLC39A5


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Basic Information Top
Gene Symbol:SLC39A5 ( LZT-Hs7,MGC34778,ZIP5 )
Gene Full Name: solute carrier family 39 (metal ion transporter), member 5
Band: 12q13.3
Quick LinksEntrez ID:283375; OMIM: 608730; Uniprot ID:S39A5_HUMAN; ENSEMBL ID: ENSG00000139540; HGNC ID: 20502
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
50N-linked (GlcNAc...) (Potential).
160N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
49N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
159N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
38Phosphotyrosine(Syk)HMM predict
49N-linkedHMM predict
86Phosphoserine(IKK)HMM predict
86Phosphoserine(CAMK2)HMM predict
91N-linkedHMM predict
159N-linkedHMM predict
170Phosphoserine(CDC2)HMM predict
176Phosphothreonine(MAPK)HMM predict
226Phosphoserine(MAPK)HMM predict
316S-palmitoylHMM predict
317S-palmitoylHMM predict
333N-linkedHMM predict
505O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_173596
  • Location:chr12 54910893-54917893
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 54909832 54911751 1919 102
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 54919052 54919342 290 1304
CTCF G2GSE9613 54920821 54921132 311 3083
CTCF G2GSE9613 54923045 54923728 683 5493
CTCF G2GSE9613 54928797 54929099 302 11055
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 54911014 54911404 390 0
CTCF G2GSE9613 54916407 54916843 436 0
CTCF G2GSE9613 54917232 54917779 547 0
NRSF pAbJurkat 54916152 54916561 409 0
NRSF pAbJurkat 54916946 54917302 356 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
6132 mRNA SLC39A5 chr12 54910893 54917894 40 mRNA FLJ34236 chr12 54917854 54925547Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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