AutismKB 2.0

Annotation Detail for SLC13A5


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Basic Information Top
Gene Symbol:SLC13A5 ( DKFZp686E17257,MGC138356,NACT )
Gene Full Name: solute carrier family 13 (sodium-dependent citrate transporter), member 5
Band: 17p13.1
Quick LinksEntrez ID:284111; OMIM: 608305; Uniprot ID:S13A5_HUMAN; ENSEMBL ID: ENSG00000141485; HGNC ID: 23089
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
562N-linked (GlcNAc...).
Location(AA) Modifications Resource
562N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
184Phosphoserine(ATM)HMM predict
211S-palmitoylHMM predict
221O-linkedHMM predict
223O-linkedHMM predict
225O-linkedHMM predict
306Phosphotyrosine(Syk)HMM predict
343Phosphothreonine(PKC)HMM predict
383Phosphothreonine(PKC)HMM predict
464Phosphoserine(IKK)HMM predict
562N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_177550
  • Location:chr17 6528764-6557387
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 BcellGSE12603 6557190 6558412 1222 414
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 6520762 6521181 419 7793
ER MCF7GSE19013 6519956 6520522 566 8526
ER MCF7GSE19013 6527061 6527658 597 1405
FOXA1 MCF7GSE15244 6527592 6527950 358 994
FoxA1 MCF7MACSdata 6527188 6527667 479 1337
H3ac HepG2E 6519683 6521348 1665 8249
RARG MCF7GSE15244 6526331 6526874 543 2162
hScc1 BcellGSE12603 6515038 6515215 177 13638
hScc1 BcellGSE12603 6519289 6519723 434 9259
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER MCF7GSE19013 6530254 6530557 303 0
H3ac HepG2E 6554393 6555446 1053 0
H3ac HepG2E 6555789 6557121 1332 0
USF2 HepG2E 6543948 6545157 1209 0
hScc1 BcellGSE12603 6534285 6534855 570 0
hScc1 BcellGSE12603 6539733 6539942 209 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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