AutismKB 2.0

Annotation Detail for CHMP4A


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CHMP4A ( C14orf123,CHMP4,CHMP4B,FLJ61658,HSPC134,MGC142093,MGC142095,SNF7,SNF7-1,Shax2,VPS32A )
Gene Full Name: chromatin modifying protein 4A
Band: 14q12
Quick LinksEntrez ID:29082; OMIM: 610051; Uniprot ID:CHM4A_HUMAN; ENSEMBL ID: ENSG00000100931; HGNC ID: 20274
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
18Phosphothreonine(MAPK)HMM predict
50Phosphothreonine(PKC)HMM predict
56Phosphothreonine(PKC)HMM predict
95N-linkedHMM predict
99N-linkedHMM predict
117Phosphotyrosine(Syk)HMM predict
188Phosphoserine(CK1)HMM predict
218AlanineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014169
  • Location:chr14 23748628-23753024
  • strand:-
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 23752050 23752551 501 0
ETS1 JurkatGSE17954 23752005 23753199 1194 0
Fos K562GSE19551 23752359 23752953 594 0
GABP HelaGSE8489 23750700 23750890 190 0
H3ac HepG2E 23750266 23750890 624 0
H3ac HepG2E 23752050 23753809 1759 0
HIF1 HypoHepG2 23752361 23752951 590 0
PHF8 293TGSE20725 23751938 23752943 1005 0
PHF8 HeLaGSE20725 23751562 23753007 1445 0
PHF8 Hs68plusFBSGSE20725 23751865 23753014 1149 0
Rb GrowingGSE19898 23752323 23752641 318 0
Rb SenescentGSE19898 23752233 23752713 480 0
Rb shRbQuiescentGSE19898 23752377 23752654 277 0
USF1 HepG2E 23749294 23749739 445 0
USF1 HepG2E 23750266 23750890 624 0
USF1 HepG2E 23752050 23753809 1759 0
USF2 HepG2E 23750596 23750890 294 0
USF2 HepG2E 23752050 23753809 1759 0
p130 QuiescentGSE19898 23752071 23752827 756 0
p130 SenescentGSE19898 23752090 23752837 747 0
p130 shRbQuiescentGSE19898 23752141 23752799 658 0
p130 shRbSenescentGSE19898 23752130 23752745 615 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
7714 mRNA chr14 23749504 23753042 711 mRNA CHMP4A chr14 23748626 23753025Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved