AutismKB 2.0

Annotation Detail for CTNNA3


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Basic Information Top
Gene Symbol:CTNNA3 ( MGC26194,MGC75041,VR22 )
Gene Full Name: catenin (cadherin-associated protein), alpha 3
Band: 10q21.3
Quick LinksEntrez ID:29119; OMIM: 607667; Uniprot ID:CTNA3_HUMAN; ENSEMBL ID: ENSG00000183230; HGNC ID: 2511
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
637Phosphoserine.
867Phosphothreonine.
Location(AA) Modifications Resource
637Phosphoserine (By similarity).Swiss-Prot 53.0
867Phosphothreonine.Swiss-Prot 53.0
867PhosphothreoninePhospho.ELM 6.0
Location(AA) Modification Resource
43N-linkedHMM predict
45Phosphoserine(CDC2)HMM predict
210Phosphoserine(PKG)HMM predict
261N-linkedHMM predict
346Phosphotyrosine(INSR)HMM predict
388Phosphoserine(IKK)HMM predict
436Phosphoserine(CK2)HMM predict
563Phosphotyrosine(INSR)HMM predict
563Phosphotyrosine(Abl)HMM predict
594Phosphoserine(CK1)HMM predict
614Phosphotyrosine(INSR)HMM predict
637Phosphoserine(CK2)HMM predict
803Phosphoserine(IKK)HMM predict
806Phosphoserine(CK1)HMM predict
821Phosphothreonine(PKC)HMM predict
882ProlineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_013266
  • Location:chr10 67349936-69125932
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
TAF k562GSE8489 69128813 69129371 558 3160
hScc1 BcellGSE12603 69127400 69127859 459 1697
hScc1 CdLSGSE12603 69127363 69127914 551 1706
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 67386690 67386724 34 0
ER E2-MCF7GSE14664 67430029 67430064 35 0
ER E2-MCF7GSE14664 67642922 67642991 69 0
ER E2-MCF7GSE14664 68662400 68662434 34 0
ER E2-MCF7GSE14664 68711459 68711495 36 0
ER E2-MCF7GSE14664 68718444 68718483 39 0
ER Fulvestrant-MCF7GSE14664 67430029 67430063 34 0
ER Fulvestrant-MCF7GSE14664 67674519 67674607 88 0
ER Fulvestrant-MCF7GSE14664 67677914 67677976 62 0
ER Fulvestrant-MCF7GSE14664 67678004 67678061 57 0
ER Fulvestrant-MCF7GSE14664 67678664 67678698 34 0
ER Fulvestrant-MCF7GSE14664 68083991 68084025 34 0
ER Fulvestrant-MCF7GSE14664 68604570 68604604 34 0
FOXA1 MCF7GSE15244 68544525 68545062 537 0
FOXA1 MCF7GSE15244 68922079 68922750 671 0
Fos K562GSE19551 69113911 69114216 305 0
Fos K562GSE19551 69120159 69120597 438 0
FoxA1 MCF7MACSdata 67498985 67499198 213 0
FoxA1 MCF7MACSdata 67645748 67645980 232 0
FoxA1 MCF7MACSdata 67717602 67717791 189 0
FoxA1 MCF7MACSdata 68002530 68002796 266 0
FoxA1 MCF7MACSdata 68055913 68056301 388 0
FoxA1 MCF7MACSdata 68345808 68346122 314 0
FoxA1 MCF7MACSdata 68544686 68545059 373 0
FoxA1 MCF7MACSdata 68936542 68936711 169 0
GABP HelaGSE8489 68561299 68561767 468 0
GABP HelaGSE8489 69032515 69033003 488 0
Nanog ESGSE20650 67610375 67610805 430 0
Nanog ESGSE20650 67824028 67824392 364 0
Nanog ESGSE20650 68252515 68252935 420 0
Nanog hESGSE18292 67759014 67759362 348 0
Nanog hESGSE18292 67824013 67824365 352 0
Nanog hESGSE18292 68252468 68252891 423 0
Nanog hESGSE18292 68322498 68323452 954 0
Nanog hESGSE18292 69039720 69040324 604 0
Oct1 H2O2-HelaGSE14283 67377115 67377153 38 0
Oct1 H2O2-HelaGSE14283 67378893 67378920 27 0
Oct1 H2O2-HelaGSE14283 67545522 67545556 34 0
Oct1 H2O2-HelaGSE14283 67644610 67644638 28 0
Oct1 H2O2-HelaGSE14283 68581505 68581540 35 0
Oct1 H2O2-HelaGSE14283 68708161 68708188 27 0
Oct1 H2O2-HelaGSE14283 68792120 68792152 32 0
Oct1 H2O2-HelaGSE14283 68799357 68799396 39 0
Oct1 H2O2-HelaGSE14283 68816875 68816904 29 0
Oct1 H2O2-HelaGSE14283 68953107 68953148 41 0
Oct1 HelaGSE14283 67377119 67377153 34 0
Oct1 HelaGSE14283 67378884 67378920 36 0
Oct1 HelaGSE14283 67386693 67386723 30 0
Oct1 HelaGSE14283 67430036 67430064 28 0
Oct1 HelaGSE14283 67471223 67471265 42 0
Oct1 HelaGSE14283 67474569 67474605 36 0
Oct1 HelaGSE14283 67540910 67540945 35 0
Oct1 HelaGSE14283 67567823 67567858 35 0
Oct1 HelaGSE14283 67612870 67612902 32 0
Oct1 HelaGSE14283 67684939 67685014 75 0
Oct1 HelaGSE14283 67744658 67744714 56 0
Oct1 HelaGSE14283 67925567 67925597 30 0
Oct1 HelaGSE14283 68078677 68078703 26 0
Oct1 HelaGSE14283 68083989 68084022 33 0
Oct1 HelaGSE14283 68111613 68111640 27 0
Oct1 HelaGSE14283 68269803 68269866 63 0
Oct1 HelaGSE14283 68312466 68312492 26 0
Oct1 HelaGSE14283 68539554 68539582 28 0
Oct1 HelaGSE14283 68581505 68581538 33 0
Oct1 HelaGSE14283 68607031 68607073 42 0
Oct1 HelaGSE14283 68662401 68662437 36 0
Oct1 HelaGSE14283 68678992 68679022 30 0
Oct1 HelaGSE14283 68718443 68718477 34 0
Oct1 HelaGSE14283 68792114 68792152 38 0
Oct1 HelaGSE14283 68799357 68799396 39 0
Oct1 HelaGSE14283 68818279 68818338 59 0
Oct1 HelaGSE14283 68946065 68946112 47 0
Oct1 HelaGSE14283 68953104 68953148 44 0
Oct1 HelaGSE14283 69025778 69025807 29 0
Oct1 HelaGSE14283 69106881 69106933 52 0
Oct4 ESGSE20650 67900326 67900670 344 0
Oct4 hESGSE17917 67758947 67759306 359 0
Oct4 hESGSE21916 68322474 68323117 643 0
P300 T30-glioblastomaGSE21026 68177084 68177816 732 0
PAX3-FKHR Rh4GSE19063 67380284 67381223 939 0
RARA MCF7GSE15244 68860413 68861108 695 0
RARA MCF7GSE15244 68921899 68922785 886 0
RARG MCF7GSE15244 68921935 68922750 815 0
RNAII Tamoxifen-MCF7GSE14664 67744462 67744553 91 0
STAT1 HeLaGSE12782 68253583 68254849 1266 0
STAT1 HeLaGSE12783 68253794 68254751 957 0
STAT1 IFNSISSRdata 68253761 68254497 736 0
TAF k562GSE8489 67759258 67759475 217 0
TFAP2C MCF7GSE21234 67687474 67688052 578 0
TFAP2C MCF7GSE21234 67702171 67702472 301 0
TFAP2C MCF7GSE21234 67752014 67752368 354 0
hScc1 BcellGSE12603 68355592 68355943 351 0
hScc1 BcellGSE12603 68950688 68951087 399 0
hScc1 BcellGSE12603 69096223 69096548 325 0
hScc1 CdLSGSE12603 67610371 67610757 386 0
hScc1 CdLSGSE12603 68056907 68057329 422 0
hScc1 CdLSGSE12603 68355443 68356098 655 0
hScc1 CdLSGSE12603 68736186 68736737 551 0
hScc1 CdLSGSE12603 68950518 68951268 750 0
hScc1 CdLSGSE12603 69096223 69096691 468 0
hScc1 G2GSE9613 68950617 68951268 651 0
p63 keratinocytesGSE17611 68124533 68125481 948 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-125b hsa-mir-125b-1 11 20306291
hsa-miR-125b-1* hsa-mir-125b-1 11 20306291
hsa-miR-646 hsa-mir-646 20 20306291
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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