AutismKB 2.0

Annotation Detail for GYPA


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Basic Information Top
Gene Symbol:GYPA ( CD235a,GPA,GPErik,GPSAT,GpMiIII,HGpMiIII,HGpMiV,HGpMiX,HGpMiXI,HGpSta(C),MN,MNS,PAS-2 )
Gene Full Name: glycophorin A (MNS blood group)
Band: 4q31.21
Quick LinksEntrez ID:2993; OMIM: 111300; Uniprot ID:GLPA_HUMAN; ENSEMBL ID: ENSG00000170180; HGNC ID: 4702
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
21O-linked (GalNAc...).
22O-linked (GalNAc...).
23O-linked (GalNAc...).
29O-linked (GalNAc...).
30O-linked (GalNAc...).
31O-linked (GalNAc...).
32O-linked (GalNAc...).
36O-linked (GalNAc...).
38O-linked (GalNAc...).
41O-linked (GalNAc...).
44O-linked (GalNAc...).
45N-linked (GlcNAc...).
52O-linked (GalNAc...).
56O-linked (GalNAc...).
63O-linked (GalNAc...).
66O-linked (GalNAc...).
69O-linked (GalNAc...).
Location(AA) Modifications Resource
21O-linked (GalNAc...).Swiss-Prot 53.0
21O-linkedOGlycBase6.0
22O-linkedOGlycBase6.0
22O-linked (GalNAc...).Swiss-Prot 53.0
23O-linked (GalNAc...).Swiss-Prot 53.0
23O-linkedOGlycBase6.0
29O-linked (GalNAc...).Swiss-Prot 53.0
29O-linkedOGlycBase6.0
30O-linkedOGlycBase6.0
30O-linked (GalNAc...).Swiss-Prot 53.0
31O-linkedOGlycBase6.0
31O-linked (GalNAc...).Swiss-Prot 53.0
32O-linkedOGlycBase6.0
32O-linked (GalNAc...).Swiss-Prot 53.0
36O-linkedOGlycBase6.0
36O-linked (GalNAc...).Swiss-Prot 53.0
38O-linkedOGlycBase6.0
38O-linked (GalNAc...).Swiss-Prot 53.0
41O-linkedOGlycBase6.0
41O-linked (GalNAc...).Swiss-Prot 53.0
44O-linkedOGlycBase6.0
44O-linked (GalNAc...).Swiss-Prot 53.0
45N-likedOGlycBase6.0
45N-linked (GlcNAc...).Swiss-Prot 53.0
52O-linked (GalNAc...).Swiss-Prot 53.0
52O-linkedOGlycBase6.0
56O-linked (GalNAc...).Swiss-Prot 53.0
56O-linkedOGlycBase6.0
63O-linked (GalNAc...).Swiss-Prot 53.0
63O-linkedOGlycBase6.0
66O-linked (GalNAc...).Swiss-Prot 53.0
66O-linkedOGlycBase6.0
69O-linkedOGlycBase6.0
69O-linked (GalNAc...).Swiss-Prot 53.0
Location(AA) Modification Resource
18O-linkedHMM predict
20O-linkedHMM predict
30O-linkedHMM predict
30O-linkedHMM predict
30O-linkedHMM predict
32O-linkedHMM predict
33O-linkedHMM predict
42Phosphoserine(ATM)HMM predict
45N-linkedHMM predict
56Phosphothreonine(MAPK)HMM predict
121Phosphoserine(CDC2)HMM predict
123PhosphoserineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002099
  • Location:chr4 145249906-145281293
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 145283658 145283949 291 2510
CTCF CD4SISSRdata 145283658 145283949 291 2510
CTCF G2GSE9613 145283331 145283854 523 2299
Myc K562GSE19551 145281219 145281561 342 97
hScc1 BcellGSE12603 145283438 145283932 494 2392
hScc1 CdLSGSE12603 145283331 145283932 601 2338
hScc1 G2GSE9613 145283230 145283854 624 2249
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Stat6 IL-4-hr4GSE17850 145236282 145236794 512 13369
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 145256348 145256378 30 0
Oct1 H2O2-HelaGSE14283 145276070 145276098 28 0
Oct1 HelaGSE14283 145260199 145260235 36 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-136 hsa-mir-136 14 17379065
hsa-miR-136* hsa-mir-136 14 17379065
hsa-miR-137 hsa-mir-137 1 17379065
hsa-miR-154 hsa-mir-154 14 17379065
hsa-miR-154* hsa-mir-154 14 17379065
hsa-miR-15b hsa-mir-15b 3 17379065
hsa-miR-15b* hsa-mir-15b 3 17379065
hsa-miR-16 hsa-mir-16-1 13 17379065
hsa-miR-16 hsa-mir-16-2 3 17379065
hsa-miR-181a hsa-mir-181a-2 9 17379065
hsa-miR-181a hsa-mir-181a-1 1 17379065
hsa-miR-181a* hsa-mir-181a-1 1 17379065
hsa-miR-181a-2* hsa-mir-181a-2 9 17379065
hsa-miR-181b hsa-mir-181b-1 1 17379065
hsa-miR-181b hsa-mir-181b-2 9 17379065
hsa-miR-181c hsa-mir-181c 19 17379065
hsa-miR-181c* hsa-mir-181c 19 17379065
hsa-miR-181d hsa-mir-181d 19 17379065
hsa-miR-185 hsa-mir-185 22 17379065
hsa-miR-185* hsa-mir-185 22 17379065
hsa-miR-22 hsa-mir-22 17 17379065
hsa-miR-22* hsa-mir-22 17 17379065
hsa-miR-221 hsa-mir-221 X 17379065
hsa-miR-221* hsa-mir-221 X 17379065
hsa-miR-28-3p hsa-mir-28 3 17379065
hsa-miR-28-5p hsa-mir-28 3 17379065
hsa-miR-32 hsa-mir-32 9 17379065
hsa-miR-32* hsa-mir-32 9 17379065
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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