Annotation Detail for PNMA3

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Basic Information Top

Gene Symbol:	PNMA3 ( MA3,MA5,MGC132756,MGC132758 )
Gene Full Name:	paraneoplastic antigen MA3
Band:	Xq28
Quick Links	Entrez ID:29944; OMIM: 300675; Uniprot ID:PNMA3_HUMAN; ENSEMBL ID: ENSG00000183837; HGNC ID: 18742
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:4 results

No data

Location(AA)	Modification	Resource
129	N-linked	HMM predict
290	N-linked	HMM predict
346	Phosphoserine(CK1)	HMM predict
387	Methylarginine	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_013364
Location:chrX 151975450-151979476
strand:+

Upstream the gene:3 results
Downstream the gene:5 results
Inside the gene:4 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	151974434	151975782	1348	343
hScc1	Bcell	GSE12603	151974853	151975634	781	207
hScc1	G2	GSE9613	151974593	151975852	1259	228

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	151982898	151983395	497	3670
CTCF	G2	GSE9613	151984464	151985736	1272	5624
Fos	K562	GSE19551	151980769	151981267	498	1542
Oct1	H2O2-Hela	GSE14283	151982804	151982837	33	3344
hScc1	G2	GSE9613	151985073	151985736	663	5928

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	151977368	151977641	273	0
CTCF	G2	GSE9613	151978493	151979541	1048	0
hScc1	Bcell	GSE12603	151978614	151979394	780	0
hScc1	G2	GSE9613	151978445	151978968	523	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
28287	mRNA	PNMA3	chrX	151895442	151899390	275	HTC		chrX	151830272	151895717	Non-exonic Bidirectional (NOB) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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