AutismKB 2.0

Annotation Detail for GYPC


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:GYPC ( CD236,CD236R,GE,GPC,GYPD,MGC117309,MGC126191,MGC126192 )
Gene Full Name: glycophorin C (Gerbich blood group)
Band: 2q14.3
Quick LinksEntrez ID:2995; OMIM: 110750; Uniprot ID:GLPC_HUMAN; ENSEMBL ID: ENSG00000136732; HGNC ID: 4704
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
3O-linked (GalNAc...).
4O-linked (GalNAc...).
6O-linked (GalNAc...).
8N-linked (GlcNAc...).
9O-linked (GalNAc...).
10O-linked (GalNAc...).
15O-linked (GalNAc...).
24O-linked (GalNAc...).
26O-linked (GalNAc...).
27O-linked (GalNAc...).
28O-linked (GalNAc...).
31O-linked (GalNAc...).
32O-linked (GalNAc...).
33O-linked (GalNAc...).
42O-linked (GalNAc...).
104Phosphoserine.
Location(AA) Modifications Resource
3O-linked (GalNAc...).Swiss-Prot 53.0
3O-linkedOGlycBase6.0
4O-linkedOGlycBase6.0
4O-linked (GalNAc...).Swiss-Prot 53.0
6O-linked (GalNAc...).Swiss-Prot 53.0
6O-linkedOGlycBase6.0
8N-likedOGlycBase6.0
8N-linked (GlcNAc...).Swiss-Prot 53.0
9O-linkedOGlycBase6.0
9O-linked (GalNAc...).Swiss-Prot 53.0
10O-linkedOGlycBase6.0
10O-linked (GalNAc...).Swiss-Prot 53.0
15O-linkedOGlycBase6.0
15O-linked (GalNAc...).Swiss-Prot 53.0
24O-linked (GalNAc...).Swiss-Prot 53.0
24O-linkedOGlycBase6.0
26O-linked (GalNAc...).Swiss-Prot 53.0
26O-linkedOGlycBase6.0
27O-linked (GalNAc...).Swiss-Prot 53.0
27O-linkedOGlycBase6.0
28O-linked (GalNAc...).Swiss-Prot 53.0
28O-linkedOGlycBase6.0
31O-linked (GalNAc...).Swiss-Prot 53.0
31O-linkedOGlycBase6.0
32O-linkedOGlycBase6.0
32O-linked (GalNAc...).Swiss-Prot 53.0
33O-linkedOGlycBase6.0
33O-linked (GalNAc...).Swiss-Prot 53.0
42O-linked (GalNAc...).Swiss-Prot 53.0
42O-linkedOGlycBase6.0
Location(AA) Modification Resource
6Phosphoserine(CDC2)HMM predict
6Phosphoserine(CDK)HMM predict
8N-linkedHMM predict
10O-linkedHMM predict
15O-linkedHMM predict
26O-linkedHMM predict
27Phosphothreonine(PKC)HMM predict
42O-linkedHMM predict
104Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002101
  • Location:chr2 127130153-127170714
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Gata2 K562GSE18868 127119154 127119809 655 10672
Gata2 K562GSE18868 127125066 127125606 540 4818
hScc1 BcellGSE12603 127113373 127113568 195 16683
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 127173147 127173356 209 2537
Myc K562GSE19551 127174794 127175098 304 4232
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 127159449 127161391 1942 0
CBP JurkatGSE17954 127161945 127169425 7480 0
CTCF G2GSE9613 127129863 127130645 782 0
CTCF G2GSE9613 127134061 127134553 492 0
CTCF G2GSE9613 127137520 127137709 189 0
CTCF G2GSE9613 127139551 127139758 207 0
CTCF G2GSE9613 127145016 127145352 336 0
CTCF G2GSE9613 127146675 127146883 208 0
CTCF G2GSE9613 127162657 127162807 150 0
Gata1 K562GSE18868 127147881 127148635 754 0
Gata2 K562GSE18868 127147856 127148649 793 0
NFkBII GM18526GSE19485 127129294 127131242 1948 0
Oct1 H2O2-HelaGSE14283 127137220 127137252 32 0
Oct1 HelaGSE14283 127133109 127133144 35 0
Oct1 HelaGSE14283 127137223 127137252 29 0
Oct1 HelaGSE14283 127162955 127163006 51 0
Rb SenescentGSE19898 127130348 127130677 329 0
Rb SenescentGSE19898 127131491 127131652 161 0
TAF HelaGSE8489 127150230 127150778 548 0
TAF k562GSE8489 127130680 127131692 1012 0
hScc1 BcellGSE12603 127134097 127134651 554 0
hScc1 BcellGSE12603 127159745 127159962 217 0
p130 QuiescentGSE19898 127131081 127131468 387 0
p130 QuiescentGSE19898 127131492 127131659 167 0
p130 QuiescentGSE19898 127131707 127132297 590 0
p130 SenescentGSE19898 127131228 127131677 449 0
p130 SenescentGSE19898 127131739 127132266 527 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-125b hsa-mir-125b-1 11 20306291
hsa-miR-125b-1* hsa-mir-125b-1 11 20306291
hsa-miR-646 hsa-mir-646 20 20306291
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
14960 mRNA GYPC chr2 127129913 127170475 483 EST chr2 127169887 127170473Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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