Annotation Detail for PDZRN4
Basic Information Top
| Gene Symbol: | PDZRN4 ( LNX4,SAMCAP3L ) |
|---|---|
| Gene Full Name: | PDZ domain containing ring finger 4 |
| Band: | 12q12 |
| Quick Links | Entrez ID:29951; OMIM: 609730; Uniprot ID:PZRN4_HUMAN; ENSEMBL ID: ENSG00000165966; HGNC ID: 30552 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 41 | S-palmitoyl | HMM predict |
| 136 | Phosphothreonine(CDC2) | HMM predict |
| 141 | Methylarginine | HMM predict |
| 146 | Methylarginine | HMM predict |
| 188 | Phosphothreonine(PKC) | HMM predict |
| 231 | N-linked | HMM predict |
| 237 | N-linked | HMM predict |
| 257 | Phosphotyrosine(EGFR) | HMM predict |
| 314 | Phosphothreonine(CDK) | HMM predict |
| 314 | Phosphothreonine(MAPK) | HMM predict |
| 331 | N-linked | HMM predict |
| 379 | Sulfotyrosine | HMM predict |
| 379 | Phosphotyrosine(Syk) | HMM predict |
| 384 | Phosphotyrosine(EGFR) | HMM predict |
| 384 | Phosphotyrosine(INSR) | HMM predict |
| 384 | Sulfotyrosine | HMM predict |
| 400 | Phosphotyrosine(EGFR) | HMM predict |
| 400 | Phosphotyrosine(Jak) | HMM predict |
| 400 | Phosphotyrosine(Syk) | HMM predict |
| 400 | Phosphotyrosine(SRC) | HMM predict |
| 400 | Sulfotyrosine | HMM predict |
| 431 | Sulfotyrosine | HMM predict |
| 431 | Phosphotyrosine(INSR) | HMM predict |
| 541 | O-linked | HMM predict |
| 568 | Phosphoserine(CK1) | HMM predict |
| 578 | N-linked | HMM predict |
| 591 | Phosphoserine(ATM) | HMM predict |
| 603 | N-linked | HMM predict |
| 643 | Sulfotyrosine | HMM predict |
| 735 | Phosphoserine(CK1) | HMM predict |
| 739 | Phosphotyrosine(Syk) | HMM predict |
| 739 | Phosphotyrosine(INSR) | HMM predict |
| 741 | O-linked | HMM predict |
| 747 | Phosphoserine(IKK) | HMM predict |
| 755 | Phosphoserine(ATM) | HMM predict |
| 755 | Phosphoserine(IKK) | HMM predict |
| 755 | Phosphoserine(CDK) | HMM predict |
| 759 | Phosphoserine(CK1) | HMM predict |
| 765 | N-linked | HMM predict |
| 768 | N-linked | HMM predict |
| 771 | N-linked | HMM predict |
| 781 | Phosphoserine(IKK) | HMM predict |
| 787 | O-linked | HMM predict |
| 787 | Phosphoserine(IKK) | HMM predict |
| 792 | O-linked | HMM predict |
| 792 | Phosphoserine(PKC) | HMM predict |
| 829 | Phosphotyrosine(Syk) | HMM predict |
| 831 | Phosphoserine(CDK) | HMM predict |
| 831 | Phosphoserine(ATM) | HMM predict |
| 865 | Phosphotyrosine(Abl) | HMM predict |
| 868 | Phosphoserine(ATM) | HMM predict |
| 902 | Phosphothreonine(PKC) | HMM predict |
| 977 | Phosphoserine(ATM) | HMM predict |
| 977 | Phosphoserine(IKK) | HMM predict |
| 1020 | Phosphoserine(CDC2) | HMM predict |
- RefSeq ID: NM_013377
- Location:chr12 40117840-40254650
- strand:+
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Nanog | hES | GSE18292 | 40272303 | 40272942 | 639 | 17972 |
| Oct1 | H2O2-Hela | GSE14283 | 40264563 | 40264591 | 28 | 9927 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 40253234 | 40253590 | 356 | 0 |
| FOXA1 | DLD1 | GSE12801 | 40127103 | 40127440 | 337 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 40120402 | 40120434 | 32 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 40144189 | 40144216 | 27 | 0 |
| Oct1 | Hela | GSE14283 | 40240797 | 40240831 | 34 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5884 | mRNA | PDZRN4 | chr12 | 40117840 | 40254658 | 35739 | EST | chr12 | 40089697 | 40153579 | Non-exonic Bidirectional (NOB) pairs | |